Evidence map›Paper›PMID 35107140›Full record

ArticleThe Journal of antimicrobial chemotherapy2022

Prevalence and patterns of HIV drug resistance in patients with suspected virological failure in North-Western Tanzania.

Shimba Henerico, Sello Given Mikasi, Samuel Elias Kalluvya, Jan M Brauner, Seif Abdul, Eric Lyimo, Bernard Desderius, Klaus Korn, Gert van Zyl, Graeme Brendon Jacobs and 2 more

Abstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 3 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Shimba HenericoBugando Medical Centre, Mwanza, United Republic of Tanzania.ORCID 0000-0003-3659-0615
Sello Given MikasiDivision of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University/National Health Laboratory Service (NHLS) Tygerberg, South Africa.
Samuel Elias KalluvyaCatholic University of Health and Allied Sciences, Bugando Medical Centre, Mwanza, United Republic of Tanzania.
Jan M BraunerDepartment of Computer Science, University of Oxford, Oxford, UK.
Seif AbdulBugando Medical Centre, Mwanza, United Republic of Tanzania.
Eric LyimoNational Institute of Medical Research, Mwanza, United Republic of Tanzania.
Bernard DesderiusBugando Medical Centre, Mwanza, United Republic of Tanzania.
Klaus KornInstitute of Clinical and Molecular Virology, University of Erlangen-Nürnberg, Erlangen, Germany.
Gert van ZylDivision of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University/National Health Laboratory Service (NHLS) Tygerberg, South Africa.ORCID 0000-0003-3021-5101
Graeme Brendon JacobsDivision of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University/National Health Laboratory Service (NHLS) Tygerberg, South Africa.
Wolfgang PreiserDivision of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University/National Health Laboratory Service (NHLS) Tygerberg, South Africa.ORCID 0000-0002-0254-7910
Christa KasangGerman Leprosy and Tuberculosis Relief Association, Wuerzburg, Germany.ORCID 0000-0003-0241-0321

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMore than 15 million people in sub-Saharan Africa receive ART. Treatment failure is common, but the role of HIV drug resistance in treatment failure is largely unknown because drug resistance testing is not routinely done. This study determined the prevalence and patterns of HIV drug resistance in patients with suspected virological failure. MATERIALS AND

methodsA single high viral load of >1000 viral RNA copies/mL of plasma at any point during ART was considered as suspected virological failure. HIV-1 RNA was extracted from plasma samples of these patients using the QIAamp Viral RNA kit. The protease and part of the RT regions of the HIV pol gene were characterized.

resultsViral load was determined in 317 patients; 64 (20.2%) had suspected virological failure. We successfully genotyped 56 samples; 48 (85.7%) had at least one major resistance-associated mutation (RAM). Common mutations in RT were M184V (75%), T215Y (41.1%), K103N (39.3%), M41L (32.1%), D67DN (30.3%), G190A (28.6%) and A98G (26.8%). No RAMs were detected in ART regimens based on a ritonavir-boosted PI.

conclusionsThe Tanzanian national guidelines define 'virological failure' as two consecutive viral load measurement results, at 3 month intervals, above the WHO threshold (1000 copies/mL). Here, we show that a single viral load above the WHO threshold is associated with high rates of RAMs. This suggests that a single high viral load measurement could be used to predict virological failure and avoid delays in switching patients from first-line to higher genetic barrier second-line regimens.

Indexed as

Anti-HIV AgentsHIV-1HIV InfectionsDrug Resistance, ViralHumansPrevalenceTanzaniaTreatment FailureViral LoadAnti-HIV Agents

Identifiers

PMID35107140
PMCPMC8809186

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.