Evidence map›Paper›PMID 35105900›Full record

ArticleNature communications2022

Adaptation to genome decay in the structure of the smallest eukaryotic ribosome.

David Nicholson, Marco Salamina, Johan Panek, Karla Helena-Bueno, Charlotte R Brown, Robert P Hirt, Neil A Ranson, Sergey V Melnikov

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Article
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  6. Review
  7. Article
  8. Article
  9. Hibernating ribosomes as drug targets?Frontiers in microbiology · 2024
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Lactobacillus for ribosome peptide editing cancer.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2023
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

David NicholsonAstbury Centre for Structural Molecular Biology, School of Molecular & Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK.ORCID http://orcid.org/0000-0001-5404-8251
Marco SalaminaBiosciences Institute, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK.
Johan PanekBiosciences Institute, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK.ORCID http://orcid.org/0000-0002-6026-9875
Karla Helena-BuenoBiosciences Institute, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK.
Charlotte R BrownBiosciences Institute, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK.ORCID http://orcid.org/0000-0002-0869-441X
Robert P HirtBiosciences Institute, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK.ORCID http://orcid.org/0000-0002-3760-9958
Neil A RansonAstbury Centre for Structural Molecular Biology, School of Molecular & Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK. n.a.ranson@leeds.ac.uk.ORCID http://orcid.org/0000-0002-3640-5275
Sergey V MelnikovBiosciences Institute, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK. sergey.melnikov@ncl.ac.uk.ORCID http://orcid.org/0000-0002-7525-9039
Newcastle University · GBUniversity of Leeds · GB

Funding

Medical Research Council G0901526Medical Research Council MR/N009738/1Wellcome Trust 108466Wellcome Trust (Wellcome) 108466/Z/15/ZWellcome Trust (Wellcome) 203743/Z/16/Z
6 · The paper itself

Abstract

The evolution of microbial parasites involves the counterplay between natural selection forcing parasites to improve and genetic drifts forcing parasites to lose genes and accumulate deleterious mutations. Here, to understand how this counterplay occurs at the scale of individual macromolecules, we describe cryo-EM structure of ribosomes from Encephalitozoon cuniculi, a eukaryote with one of the smallest genomes in nature. The extreme rRNA reduction in E. cuniculi ribosomes is accompanied with unparalleled structural changes, such as the evolution of previously unknown molten rRNA linkers and bulgeless rRNA. Furthermore, E. cuniculi ribosomes withstand the loss of rRNA and protein segments by evolving an ability to use small molecules as structural mimics of degenerated rRNA and protein segments. Overall, we show that the molecular structures long viewed as reduced, degenerated, and suffering from debilitating mutations possess an array of compensatory mechanisms that allow them to remain active despite the extreme molecular reduction.

Indexed as

Cryoelectron MicroscopyEncephalitozoon cuniculiEukaryotaEukaryotic CellsEvolution, MolecularGenomeRibosomesRNA, RibosomalRNA, Ribosomal

Identifiers

PMID35105900
PMCPMC8807834
OpenAlexW4210308465

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.