Evidence map›Paper›PMID 35105882›Full record

ArticleNature communications2022

The WID-BC-index identifies women with primary poor prognostic breast cancer based on DNA methylation in cervical samples.

James E Barrett, Chiara Herzog, Allison Jones, Olivia C Leavy, Iona Evans, Susanne Knapp, Daniel Reisel, Tatiana Nazarenko, Yoo-Na Kim, Dorella Franchi and 15 more

Registry-linked trialOpen access · goldAbstract readEvaluation Study
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05678426 (TirolGESUND), which is not on this map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
4.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05678426 nacompletednot on this map

TirolGESUND: General Exercise, Smoking Undone, and Nutrition Diet

TypeinterventionalSponsorUniversitaet InnsbruckRan2021 to 2025Enrolled156ConditionsHealthy, Healthy Lifestyle, Smoking Cessation, Intermittent FastingArmsSmoking cessation, Intermittent fasting, Intermittent fasting with ketogenic supplement
3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 50 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 11 institutions in 7 countries.

James E Barrett *European Translational Oncology Prevention and Screening (EUTOPS) Institute, Universität Innsbruck, Innsbruck, Austria, Hall in Tirol, Austria.
Chiara Herzog *European Translational Oncology Prevention and Screening (EUTOPS) Institute, Universität Innsbruck, Innsbruck, Austria, Hall in Tirol, Austria.ORCID http://orcid.org/0000-0002-1572-498X
Allison JonesDepartment of Women's Cancer, University College London, London, UK.
Olivia C LeavyDepartment of Health Sciences, University of Leicester, Leicester, LE1 7RH, UK.ORCID http://orcid.org/0000-0002-1503-5535
Iona EvansDepartment of Women's Cancer, University College London, London, UK.
Susanne KnappDepartment of Women's Cancer, University College London, London, UK.
Daniel ReiselDepartment of Women's Cancer, University College London, London, UK.
Tatiana NazarenkoDepartment of Women's Cancer, University College London, London, UK.ORCID http://orcid.org/0000-0002-4245-7346
Yoo-Na KimEuropean Translational Oncology Prevention and Screening (EUTOPS) Institute, Universität Innsbruck, Innsbruck, Austria, Hall in Tirol, Austria.ORCID http://orcid.org/0000-0002-0202-3228
Dorella FranchiIstituto Europeo di Oncologia, IRCCS, Milan, Italy.
Andy RyanDepartment of Women's Cancer, University College London, London, UK.
Joanna FranksBreast Service, University College London Hospital, London, UK.
Line BjørgeDepartment of Obstetrics and Gynaecology, Haukeland University Hospital, Bergen, Norway.
Michal ZikanDepartment of Gynecology and Obstetrics, First Faculty of Medicine, Charles University in Prague, University Hospital Bulovka, Prague, Czech Republic.ORCID http://orcid.org/0000-0001-5266-8895
David CibulaGynaecologic Oncology Center, Department of Obstetrics and Gynecology, First Faculty of Medicine, Charles University in Prague, General University Hospital in Prague, Prague, Czech Republic.ORCID http://orcid.org/0000-0001-6387-9356
Nadia HarbeckBreast Center, Department of Obstetrics and Gynecology, University of Munich (LMU), Munich, Germany.ORCID http://orcid.org/0000-0002-9744-7372
Nicoletta ColomboIstituto Europeo di Oncologia, IRCCS, Milan, Italy.
Frank DudbridgeDepartment of Health Sciences, University of Leicester, Leicester, LE1 7RH, UK.ORCID http://orcid.org/0000-0002-8817-8908
Louise JonesCentre for Tumour Biology Department, Barts Cancer Institute, Queen Mary University of London, London, UK.
Karin SundströmDepartment of Laboratory Medicine, Division of Pathology, Karolinska Institutet, Stockholm, Sweden.
Joakim DillnerDepartment of Laboratory Medicine, Division of Pathology, Karolinska Institutet, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-8588-6506
Angelique Flöter RådestadDepartment of Women's and Children's Health, Karolinska Institutet and Karolinska University Hospital, Stockholm, Sweden.
Kristina Gemzell-DanielssonDepartment of Women's and Children's Health, Karolinska Institutet and Karolinska University Hospital, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-6516-1444
Nora PashayanDepartment of Applied Health Research, University College London, London, UK.ORCID http://orcid.org/0000-0003-0843-2468
Martin WidschwendterEuropean Translational Oncology Prevention and Screening (EUTOPS) Institute, Universität Innsbruck, Innsbruck, Austria, Hall in Tirol, Austria. martin.widschwendter@uibk.ac.at.ORCID http://orcid.org/0000-0002-7778-8380
University College London · GBKarolinska University Hospital · SEUniversität Innsbruck · ATCharles University · CZIstituto Oncologico Veneto · ITKarolinska Institutet · SEUniversity of Leicester · GBHaukeland University Hospital · NOLudwig-Maximilians-Universität München · DEQueen Mary University of London · GBUniversity College Hospital · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic and non-genetic factors contribute to breast cancer development. An epigenome-based signature capturing these components in easily accessible samples could identify women at risk. Here, we analyse the DNA methylome in 2,818 cervical, 357 and 227 matched buccal and blood samples respectively, and 42 breast tissue samples from women with and without breast cancer. Utilising cervical liquid-based cytology samples, we develop the DNA methylation-based Women's risk IDentification for Breast Cancer index (WID-BC-index) that identifies women with breast cancer with an AUROC (Area Under the Receiver Operator Characteristic) of 0.84 (95% CI: 0.80-0.88) and 0.81 (95% CI: 0.76-0.86) in internal and external validation sets, respectively. CpGs at progesterone receptor binding sites hypomethylated in normal breast tissue of women with breast cancer or in BRCA mutation carriers are also hypomethylated in cervical samples of women with poor prognostic breast cancer. Our data indicate that a systemic epigenetic programming defect is highly prevalent in women who develop breast cancer. Further studies validating the WID-BC-index may enable clinical implementation for monitoring breast cancer risk.

Indexed as

DNA MethylationBiomarkers, TumorBreastBreast NeoplasmsCervix UteriCpG IslandsEpigenomeEpigenomicsEpithelial CellsFemaleHumansMutationPrognosisROC CurveBiomarkers, Tumor

Identifiers

PMID35105882
PMCPMC8807602
OpenAlexW4210735644

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.