Evidence map›Paper›PMID 35105854›Full record

ArticleBlood cancer journal2022

Determining clinical course of diffuse large B-cell lymphoma using targeted transcriptome and machine learning algorithms.

Maher Albitar, Hong Zhang, Andre Goy, Zijun Y Xu-Monette, Govind Bhagat, Carlo Visco, Alexandar Tzankov, Xiaosheng Fang, Feng Zhu, Karen Dybkaer and 16 more

Abstract read
In one paragraph

Article in Blood cancer journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Homologous Recombination Abnormalities Associated WithBreast cancer : basic and clinical research · 2023
    Article
  9. Article
  10. Review
  11. Frontiers in immunology · 2022
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Maher Albitar *Genomic Testing Cooperative, LCA, Irvine, CA, 92618, USA. malbitar@genomictestingcooperative.com.ORCID 0000-0002-0050-2030
Hong Zhang *Genomic Testing Cooperative, LCA, Irvine, CA, 92618, USA.
Andre Goy *John Theurer Cancer Center at Hackensack University Medical Center, Hackensack, NJ, 07601, USA.ORCID 0000-0001-5125-6522
Zijun Y Xu-Monette *Duke University Medical Center, Durham, NC, 27710, USA.
Govind BhagatColumbia University Medical Center, New York, NY, 10027, USA.ORCID 0000-0001-6250-048X
Carlo ViscoUniversity of Verona, 37129, Verona, Italy.
Alexandar TzankovInstitute of Pathology, University Hospital Basel, 4054, Basel, Switzerland.ORCID 0000-0002-1100-3819
Xiaosheng FangDuke University Medical Center, Durham, NC, 27710, USA.
Feng ZhuDuke University Medical Center, Durham, NC, 27710, USA.
Karen DybkaerAalborg University Hospital, Aalborg, 5000-5270, Denmark.
April ChiuMayo Clinic, Rochester, MN, 55905, USA.
Wayne TamWeill Medical College of Cornell University, New York, NY, 10065, USA.ORCID 0000-0003-4283-0005
Youli ZuThe Methodist Hospital, Houston, TX, 77030, USA.
Eric D HsiWake Forest University Medical Center, Winston-Salem, NC, 77055, USA.
Fredrick B HagemeisterThe University of Texas MD Anderson Cancer Center, Houston, TX, 22030, USA.
Jooryung HuhAsan Medical Center, Ulsan University College of Medicine, Seoul, 05505, Korea.
Maurilio PonzoniSan Raffaele H. Scientific Institute, 20132, Milan, Italy.
Andrés J M FerreriSan Raffaele H. Scientific Institute, 20132, Milan, Italy.ORCID 0000-0001-9606-6124
Michael B MøllerOdense University Hospital, Odense, 5000-5270, Denmark.ORCID 0000-0003-2041-3630
Benjamin M ParsonsGundersen Lutheran Health System, La Crosse, WI, 54601, USA.
J Han van KriekenRadboud University Nijmegen Medical Centre, 6500, Nijmegen, Netherlands.
Miguel A PirisHospital Universitario Marqués de Valdecilla, 39008, Santander, Spain.
Jane N WinterFeinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA.
Yong LiBaylor College of Medicine, Houston, TX, 77030, USA.ORCID 0000-0001-8838-1714
Bing XuThe First Affiliated Hospital of Xiamen University, 361004, Xiamen, Fujian, China. xubingzhangjian@126.com.ORCID 0000-0002-7271-4438
Ken H YoungDuke University Medical Center, Durham, NC, 27710, USA. ken.young@duke.edu.ORCID 0000-0002-5755-8932

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI JOHN N. NORTON · 1985 to 2026
$174.8M
Genetic and Epigenetic Biomarkers for B-cell LymphomaR01CA233490 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI YOUNG, KEN H. · 2019 to 2023
$1.8M
NCI NIH HHS P30 CA014236NCI NIH HHS R01 CA233490
6 · The paper itself

Abstract

Multiple studies have demonstrated that diffuse large B-cell lymphoma (DLBCL) can be divided into subgroups based on their biology; however, these biological subgroups overlap clinically. Using machine learning, we developed an approach to stratify patients with DLBCL into four subgroups based on survival characteristics. This approach uses data from the targeted transcriptome to predict these survival subgroups. Using the expression levels of 180 genes, our model reliably predicted the four survival subgroups and was validated using independent groups of patients. Multivariate analysis showed that this patient stratification strategy encompasses various biological characteristics of DLBCL, and only TP53 mutations remained an independent prognostic biomarker. This novel approach for stratifying patients with DLBCL, based on the clinical outcome of rituximab, cyclophosphamide, doxorubicin, vincristine, and prednisone therapy, can be used to identify patients who may not respond well to these types of therapy, but would otherwise benefit from alternative therapy and clinical trials.

Indexed as

Lymphoma, Large B-Cell, DiffuseTranscriptomeAlgorithmsAntineoplastic Combined Chemotherapy ProtocolsCyclophosphamideDoxorubicinHumansMachine LearningPrednisonePrognosisRituximabVincristineCyclophosphamideDoxorubicinPrednisoneRituximabVincristine

Identifiers

PMID35105854
PMCPMC8807629

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.