Evidence map›Paper›PMID 35103977›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

LncRNA-Chromatin Pull-Down Using Biotin-Conjugated DNA Probes.

Debina Sarkar, Sarah D Diermeier

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Debina SarkarDepartment of Biochemistry, University of Otago, Dunedin, New Zealand.
Sarah D DiermeierDepartment of Biochemistry, University of Otago, Dunedin, New Zealand. sarah.diermeier@otago.ac.nz.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Long noncoding RNAs (lncRNAs) are a class of RNA molecules that have been associated with several important biological processes and linked to numerous diseases. Due to their cell type- and tissue specific expression, lncRNAs are involved in a wide range of molecular pathways. To fully understand how a lncRNA is linked to a biological process, its mechanism of action needs to be uncovered. Nuclear retained lncRNAs have been described to modulate gene expression directly or indirectly by interacting with chromatin and associated factors. Described here is an RNA pull-down strategy, which enables the identification of chromatin regions directly bound by a lncRNA of interest. This method is an important step toward investigating how lncRNAs regulate gene expression and/or chromatin states.

Indexed as

ChromatinRNA, Long NoncodingBiotinCell NucleusDNA ProbesBiotinChromatinDNA ProbesRNA, Long NoncodingChromatinlncRNAPull-down assay

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.