Evidence map›Paper›PMID 35103816›Full record

ArticleActa neuropathologica2022

High-grade glioma with pleomorphic and pseudopapillary features (HPAP): a proposed type of circumscribed glioma in adults harboring frequent TP53 mutations and recurrent monosomy 13.

Drew Pratt, Zied Abdullaev, Antonios Papanicolau-Sengos, Courtney Ketchum, Pavalan Panneer Selvam, Hye-Jung Chung, Ina Lee, Mark Raffeld, Mark R Gilbert, Terri S Armstrong and 12 more

Open access · greenAbstract read
In one paragraph

Article in Acta neuropathologica, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 53 citations in OpenAlex.

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  20. Signaling pathways in brain tumors and therapeutic interventions.Signal transduction and targeted therapy · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 8 institutions in 1 country.

Drew PrattLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20814, USA. prattdw@nih.gov.ORCID 0000-0003-3583-8308
Zied AbdullaevLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20814, USA.
Antonios Papanicolau-SengosLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20814, USA.
Courtney KetchumLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20814, USA.
Pavalan Panneer SelvamLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20814, USA.
Hye-Jung ChungLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20814, USA.
Ina LeeLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20814, USA.
Mark RaffeldLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20814, USA.
Mark R GilbertNeuro-Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Terri S ArmstrongNeuro-Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Peter PytelDepartment of Pathology, University of Chicago Medicine, Chicago, IL, USA.
Ewa BorysDepartment of Pathology, Loyola University Medical Center, Maywood, IL, USA.
Joshua M KlonoskiDepartment of Pathology and ARUP Laboratories, University of Utah Health Sciences Center, Salt Lake City, USA.
Matthew McCordDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Craig HorbinskiDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Daniel BratDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Arie PerryDepartment of Pathology, University of California, San Francisco, CA, USA.
David SolomonDepartment of Pathology, University of California, San Francisco, CA, USA.
Charles EberhartDepartment of Neuropathology and Ophthalmic Pathology, Johns Hopkins University, Baltimore, MD, USA.
Caterina GianniniDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA.
Martha QuezadoLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20814, USA.
Kenneth AldapeLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, 20814, USA. kenneth.aldape@nih.gov.
National Cancer Institute · USNorthwestern University · USUniversity of California, San Francisco · USJohns Hopkins University · USLoyola University Medical Center · USMayo Clinic in Arizona · USUniversity of Chicago · USUniversity of Utah · US

Funding

Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI WILLIAM George NELSON · 1985 to 2026
$208.6M
Brain Tumor Clinical and Clinical Research Program (Clinical Support Services)ZIDBC011642 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI OZER, BYRAM · 2015 to 2025
$23.4M
Natural History and Specimen Banking for Patients with CNS TumorsZIABC011768 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ARMSTRONG, TERRI S. · 2017 to 2024
$6.7M
Genomic Biomarkers of CancerZIABC011850 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ALDAPE, KENNETH · 2019 to 2025
$5.1M
Classification of tumors using whole-genome methylation profilingZIDBC012090 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ABDULLAEV, ZIED · 2022 to 2025
$2.9M
DNA methylation-based machine classification of cancerZIABC012117 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI PRATT, DREW · 2022 to 2025
$2.3M
NCI NIH HHS P30 CA006973
6 · The paper itself

Abstract

Tumors of the central nervous system (CNS) often display a wide morphologic spectrum that has, until recently, been the sole basis for tumor classification. The introduction of the integrated histomolecular diagnostic approach in CNS tumors has facilitated a classification system that is increasingly data-driven and with improved alignment to clinical outcome. Here, we report a previously uncharacterized glioma type (n = 31) using unsupervised clustering analysis of DNA methylation array data from approximately 14,000 CNS tumor samples. Histologic examination revealed circumscribed growth and morphologic similarities to pleomorphic xanthoastrocytoma (PXA), astroblastoma, ependymoma, polymorphous neuroepithelial tumor of the young (PLNTY), and IDH-wildtype glioblastoma (GBM). Median age (46.5 years) was significantly older than other circumscribed gliomas and younger than GBM. Dimensionality reduction with uniform manifold approximation and projection (UMAP) and hierarchical clustering confirmed a methylation signature distinct from known tumor types and methylation classes. DNA sequencing revealed recurrent mutations in TP53 (57%), RB1 (26%), NF1 (26%), and NF2 (14%). BRAF V600E mutations were detected in 3/27 sequenced cases (12%). Copy number analysis showed increased whole chromosome aneuploidy with recurrent loss of chromosome 13 (28/31 cases, 90%). CDKN2A/B deletion (2/31, 6%) and MGMT promoter methylation (1/31, 3%) were notably rare events. Most tumors showed features of a high-grade glioma, yet survival data showed significantly better overall survival compared to GBM (p < 0.0001). In summary, we describe a previously uncharacterized glioma of adults identified by a distinct DNA methylation signature and recurrent loss of chromosome 13.

Indexed as

AstrocytomaBrain NeoplasmsGliomaMonosomyMutationTumor Suppressor Protein p53Chromosomes, Human, Pair 13HumansMiddle AgedTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID35103816
PMCPMC9844519
OpenAlexW4210586622

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.