Evidence map›Paper›PMID 35100402›Full record

ArticleNucleic acids research2022

Gain of C-Ala enables AlaRS to target the L-shaped tRNAAla.

Titi Rindi Antika, Dea Jolie Chrestella, Indira Rizqita Ivanesthi, Gita Riswana Nawung Rida, Kuan-Yu Chen, Fu-Guo Liu, Yi-Chung Lee, Yu-Wei Chen, Yi-Kuan Tseng, Chien-Chia Wang

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Adaptive evolution: Eukaryotic enzyme's specificity shift to a bacterial substrate.Protein science : a publication of the Protein Society · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Titi Rindi AntikaDepartment of Life Sciences, National Central University, Zhongli District, Taoyuan 32001, Taiwan.
Dea Jolie ChrestellaDepartment of Life Sciences, National Central University, Zhongli District, Taoyuan 32001, Taiwan.
Indira Rizqita IvanesthiDepartment of Life Sciences, National Central University, Zhongli District, Taoyuan 32001, Taiwan.
Gita Riswana Nawung RidaDepartment of Life Sciences, National Central University, Zhongli District, Taoyuan 32001, Taiwan.
Kuan-Yu ChenDepartment of Life Sciences, National Central University, Zhongli District, Taoyuan 32001, Taiwan.
Fu-Guo LiuDepartment of Life Sciences, National Central University, Zhongli District, Taoyuan 32001, Taiwan.
Yi-Chung LeeDepartment of Neurology, Taipei Veterans General Hospital, Beitou District, Taipei 11217, Taiwan.
Yu-Wei ChenDepartment of Neurology, Landseed International Hospital, Pingzhen District, Taoyuan 32449, Taiwan.
Yi-Kuan TsengGraduate Institute of Statistics, National Central University, Zhongli District, Taoyuan 32001, Taiwan.
Chien-Chia WangDepartment of Life Sciences, National Central University, Zhongli District, Taoyuan 32001, Taiwan.ORCID 0000-0002-7104-1307
National Central University · TWLandseed Hospital · TWTaipei Veterans General Hospital · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Unlike many other aminoacyl-tRNA synthetases, alanyl-tRNA synthetase (AlaRS) retains a conserved prototype structure throughout biology. While Caenorhabditis elegans cytoplasmic AlaRS (CeAlaRSc) retains the prototype structure, its mitochondrial counterpart (CeAlaRSm) contains only a residual C-terminal domain (C-Ala). We demonstrated herein that the C-Ala domain from CeAlaRSc robustly binds both tRNA and DNA. It bound different tRNAs but preferred tRNAAla. Deletion of this domain from CeAlaRSc sharply reduced its aminoacylation activity, while fusion of this domain to CeAlaRSm selectively and distinctly enhanced its aminoacylation activity toward the elbow-containing (or L-shaped) tRNAAla. Phylogenetic analysis showed that CeAlaRSm once possessed the C-Ala domain but later lost most of it during evolution, perhaps in response to the deletion of the T-arm (part of the elbow) from its cognate tRNA. This study underscores the evolutionary gain of C-Ala for docking AlaRS to the L-shaped tRNAAla.

Indexed as

Alanine-tRNA LigaseAmino Acyl-tRNA SynthetasesAminoacylationPhylogenyRNA, TransferRNA, Transfer, AlaAlanine-tRNA LigaseAmino Acyl-tRNA SynthetasesRNA, TransferRNA, Transfer, Ala

Identifiers

PMID35100402
PMCPMC8887476
OpenAlexW4205707545

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.