Evidence map›Paper›PMID 35100369›Full record

ArticleG3 (Bethesda, Md.)2022

Transgenic Drosophila lines for LexA-dependent gene and growth regulation.

Kathleen R Chang, Deborah D Tsao, Celine Bennett, Elaine Wang, Jax F Floyd, Ashley S Y Tay, Emily Greenwald, Ella S Kim, Catherine Griffin, Elizabeth Morse and 8 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Expanding theeLife · 2024
    Article
  7. CRISPR/Cas9 gene editing inbioRxiv : the preprint server for biology · 2024
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 2 countries.

Kathleen R ChangStanford University, Stanford, CA 94305, USA.
Deborah D TsaoDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Celine BennettDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Elaine WangThe Lawrenceville School, Lawrenceville, NJ 08648, USA.
Jax F FloydThe Lawrenceville School, Lawrenceville, NJ 08648, USA.
Ashley S Y TayThe Lawrenceville School, Lawrenceville, NJ 08648, USA.
Emily GreenwaldDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0001-9991-6489
Ella S KimPhillips Exeter Academy, Exeter, NH 03833, USA.
Catherine GriffinPhillips Exeter Academy, Exeter, NH 03833, USA.
Elizabeth MorsePhillips Exeter Academy, Exeter, NH 03833, USA.
Townley ChisholmPhillips Exeter Academy, Exeter, NH 03833, USA.
Anne E RankinPhillips Exeter Academy, Exeter, NH 03833, USA.
Luis Alberto Baena-LopezSir William Dunn School of Pathology, University of Oxford, Oxford OX1 3RE, UK.ORCID 0000-0002-8663-3794
Nicole LantzThe Lawrenceville School, Lawrenceville, NJ 08648, USA.
Elizabeth FoxThe Lawrenceville School, Lawrenceville, NJ 08648, USA.
Lutz KockelDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0003-4631-8594
Seung K KimDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Sangbin ParkDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0002-2304-1898
Stanford University · USPhillips Exeter Academy · USUniversity of Oxford · GB

Funding

INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
Stanford Islet Research CoreP30DK116074 · NIDDK · STANFORD UNIVERSITY · PI Seung K Kim · 2017 to 2026
$19.5M
Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
Drosophila Transgenic RNAi Resource ProjectR01GM084947 · NIGMS · HARVARD MEDICAL SCHOOL · PI PERRIMON, NORBERT · 2008 to 2019
$9.8M
Therapeutic targeting of human islets with recombinant regulatory T cellsU01DK123743 · NIDDK · STANFORD UNIVERSITY · PI KIM, SEUNG K, MEYER, EVERETT · 2019 to 2022
$2.9M
Regulation of gastrointestinal hormone signaling and metabolism by Neuromedin UR01DK107507 · NIDDK · STANFORD UNIVERSITY · PI KIM, SEUNG K · 2017 to 2021
$2.0M
Discovering genetic and hormonal mechanisms underlying diabetes risk from flies to humansR01DK108817 · NIDDK · STANFORD UNIVERSITY · PI KIM, SEUNG K · 2018 to 2022
$2.0M
Cancer Research UK 17516NHGRI NIH HHS T32 HG000044NIDDK NIH HHS P30 DK116074NIDDK NIH HHS R01 DK107507NIDDK NIH HHS R01 DK108817NIDDK NIH HHS U01 DK123743NIGMS NIH HHS R01 GM084947NIH HHS P40 OD018537NIH HHS R01 DK107507
6 · The paper itself

Abstract

Conditional expression of short hairpin RNAs with binary genetic systems is an indispensable tool for studying gene function. Addressing mechanisms underlying cell-cell communication in vivo benefits from simultaneous use of 2 independent gene expression systems. To complement the abundance of existing Gal4/UAS-based resources in Drosophila, we and others have developed LexA/LexAop-based genetic tools. Here, we describe experimental and pedagogical advances that promote the efficient conversion of Drosophila Gal4 lines to LexA lines, and the generation of LexAop-short hairpin RNA lines to suppress gene function. We developed a CRISPR/Cas9-based knock-in system to replace Gal4 coding sequences with LexA, and a LexAop-based short hairpin RNA expression vector to achieve short hairpin RNA-mediated gene silencing. We demonstrate the use of these approaches to achieve targeted genetic loss-of-function in multiple tissues. We also detail our development of secondary school curricula that enable students to create transgenic flies, thereby magnifying the production of well-characterized LexA/LexAop lines for the scientific community. The genetic tools and teaching methods presented here provide LexA/LexAop resources that complement existing resources to study intercellular communication coordinating metazoan physiology and development.

Indexed as

DrosophilaDrosophila ProteinsAnimalsAnimals, Genetically ModifiedDrosophila melanogasterHumansDrosophila ProteinsCRISPR/Cas9DrosophilaLexALexAopshRNA

Identifiers

PMID35100369
PMCPMC8895989
OpenAlexW4220780044

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.