Evidence map›Paper›PMID 35100345›Full record

ArticleG3 (Bethesda, Md.)2022

Genetic analysis of Caenorhabditis elegans pry-1/Axin suppressors identifies genes involved in reproductive structure development, stress responses, and aging.

Avijit Mallick, Nikita Jhaveri, Jihae Jeon, Yvonne Chang, Krupali Shah, Hannah Hosein, Bhagwati P Gupta

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 59% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Avijit MallickDepartment of Biology, McMaster University, Hamilton, ON L8S4K1, Canada.ORCID 0000-0002-9423-7134
Nikita JhaveriDepartment of Biology, McMaster University, Hamilton, ON L8S4K1, Canada.
Jihae JeonDepartment of Biology, McMaster University, Hamilton, ON L8S4K1, Canada.
Yvonne ChangDepartment of Biology, McMaster University, Hamilton, ON L8S4K1, Canada.
Krupali ShahDepartment of Biology, McMaster University, Hamilton, ON L8S4K1, Canada.
Hannah HoseinDepartment of Biology, McMaster University, Hamilton, ON L8S4K1, Canada.
Bhagwati P GuptaDepartment of Biology, McMaster University, Hamilton, ON L8S4K1, Canada.ORCID 0000-0001-8572-7054
McMaster University · CA

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
NIH HHS P40 OD010440
6 · The paper itself

Abstract

The Axin family of scaffolding proteins regulates a wide array of developmental and post-developmental processes in eukaryotes. Studies in the nematode Caenorhabditis elegans have shown that the Axin homolog PRY-1 plays essential roles in multiple tissues. To understand the genetic network of pry-1, we focused on a set of genes that are differentially expressed in the pry-1-mutant transcriptome and are linked to reproductive structure development. Knocking down eight of the genes (spp-1, clsp-1, ard-1, rpn-7, cpz-1, his-7, cdk-1, and rnr-1) via RNA interference efficiently suppressed the multivulva phenotype of pry-1 mutants. In all cases, the ectopic induction of P3.p vulval precursor cell was also inhibited. The suppressor genes are members of known gene families in eukaryotes and perform essential functions. Our genetic interaction experiments revealed that in addition to their role in vulval development, these genes participate in one or more pry-1-mediated biological events. Whereas four of them (cpz-1, his-7, cdk-1, and rnr-1) function in both stress response and aging, two (spp-1 and ard-1) are specific to stress response. Altogether, these findings demonstrate the important role of pry-1 suppressors in regulating developmental and post-developmental processes in C. elegans. Given that the genes described in this study are conserved, future investigations of their interactions with Axin and their functional specificity promises to uncover the genetic network of Axin in metazoans.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAgingAnimalsAxin ProteinFemaleGene Regulatory NetworksVulvaAxin ProteinCaenorhabditis elegans ProteinsPry-1 protein, C elegansagingAxinC. eleganspry-1stress responsevulva developmentWNT signaling

Identifiers

PMID35100345
PMCPMC9210326
OpenAlexW4200384972

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.