Evidence map›Paper›PMID 35100331›Full record

ArticleG3 (Bethesda, Md.)2022

Genome assembly of Danaus chrysippus and comparison with the Monarch Danaus plexippus.

Kumar Saurabh Singh, Rishi De-Kayne, Kennedy Saitoti Omufwoko, Dino J Martins, Chris Bass, Richard Ffrench-Constant, Simon H Martin

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  6. Stepwise evolution of a butterfly supergene via duplication and inversion.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 4 countries.

Kumar Saurabh SinghBioinformatics Group, Wageningen University, Wageningen 6708 PB, The Netherlands.ORCID 0000-0001-8352-5897
Rishi De-KayneInstitute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3FL, UK.ORCID 0000-0001-5569-8061
Kennedy Saitoti OmufwokoDepartment of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA.ORCID 0000-0002-0321-5117
Dino J MartinsDepartment of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA.ORCID 0000-0003-1581-1642
Chris BassCentre for Ecology and Conservation, University of Exeter, Penryn TR10 9FE, UK.ORCID 0000-0002-2590-1492
Richard Ffrench-ConstantCentre for Ecology and Conservation, University of Exeter, Penryn TR10 9FE, UK.ORCID 0000-0001-5385-9888
Simon H MartinInstitute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3FL, UK.ORCID 0000-0002-0747-7456
Princeton University · USUniversity of Edinburgh · GBUniversity of Exeter · GBWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Milkweed butterflies in the genus Danaus are studied in a diverse range of research fields including the neurobiology of migration, biochemistry of plant detoxification, host-parasite interactions, evolution of sex chromosomes, and speciation. We have assembled a nearly chromosomal genome for Danaus chrysippus (known as the African Monarch, African Queen, and Plain Tiger) using long-read sequencing data. This species is of particular interest for the study of genome structural change and its consequences for evolution. Comparison with the genome of the North American Monarch Danaus plexippus reveals generally strong synteny but highlights 3 inversion differences. The 3 chromosomes involved were previously found to carry peaks of intraspecific differentiation in D. chrysippus in Africa, suggesting that these inversions may be polymorphic and associated with local adaptation. The D. chrysippus genome is over 40% larger than that of D. plexippus, and nearly all of the additional ∼100 Megabases of DNA comprises repeats. Future comparative genomic studies within this genus will shed light on the evolution of genome architecture.

Indexed as

ButterfliesAnimalsGenomeHost-Parasite InteractionsSex ChromosomesSyntenyAfrican MonarchAfrican Queenbutterflygenome sizeintron lengthPlain Tigerrepeat content

Identifiers

PMID35100331
PMCPMC9210279
OpenAlexW4220694957

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.