Evidence map›Paper›PMID 35098385›Full record

ArticleWorld journal of microbiology & biotechnology2022

Genome analysis of Pseudomonas sp. 14A reveals metabolic capabilities to support epiphytic behavior.

Saúl Alejandro Medina-Salazar, Fernanda Cornejo-Granados, Edgar Equihua-Medina, Adrian Ochoa-Leyva, Moisés Roberto Vallejo-Pérez, Delia Xochil Vega-Manriquez, Ramón Jarquin-Gálvez, Rigoberto Castro-Rivera, Gisela Aguilar-Benítez, José Pablo Lara-Ávila

Abstract read
PubMed Publisher
In one paragraph

Article in World journal of microbiology & biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Saúl Alejandro Medina-SalazarFacultad de Agronomía y Veterinaria, Universidad Autónoma de San Luis Potosí, Km. 14.5 Carretera San Luis Potosí-Matehuala, Ejido Palma de la Cruz, Apartado Postal 32, CP 78321, Soledad de Graciano Sánchez, SLP, México.
Fernanda Cornejo-GranadosDepartamento de Microbiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, México.
Edgar Equihua-MedinaDepartamento de Microbiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, México.
Adrian Ochoa-LeyvaDepartamento de Microbiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, México.
Moisés Roberto Vallejo-PérezCONACYT, Coordinación para la Innovación y Aplicación de la Ciencia y la Tecnología (CIACYT), Universidad Autónoma de San Luis Potosí, San Luis Potosí, SLP, México.
Delia Xochil Vega-ManriquezFacultad de Agronomía y Veterinaria, Universidad Autónoma de San Luis Potosí, Km. 14.5 Carretera San Luis Potosí-Matehuala, Ejido Palma de la Cruz, Apartado Postal 32, CP 78321, Soledad de Graciano Sánchez, SLP, México.
Ramón Jarquin-GálvezFacultad de Agronomía y Veterinaria, Universidad Autónoma de San Luis Potosí, Km. 14.5 Carretera San Luis Potosí-Matehuala, Ejido Palma de la Cruz, Apartado Postal 32, CP 78321, Soledad de Graciano Sánchez, SLP, México.
Rigoberto Castro-RiveraInstituto Politécnico Nacional, Centro de Investigación en Biotecnología Aplicada, Tlaxcala, Mexico.
Gisela Aguilar-BenítezFacultad de Agronomía y Veterinaria, Universidad Autónoma de San Luis Potosí, Km. 14.5 Carretera San Luis Potosí-Matehuala, Ejido Palma de la Cruz, Apartado Postal 32, CP 78321, Soledad de Graciano Sánchez, SLP, México.
José Pablo Lara-ÁvilaFacultad de Agronomía y Veterinaria, Universidad Autónoma de San Luis Potosí, Km. 14.5 Carretera San Luis Potosí-Matehuala, Ejido Palma de la Cruz, Apartado Postal 32, CP 78321, Soledad de Graciano Sánchez, SLP, México. pablo.lara@uaslp.mx.ORCID http://orcid.org/0000-0002-2753-5086
Autonomous University of San Luis Potosí · MXUniversidad Nacional Autónoma de México · MXInstituto Politécnico Nacional · MX

Funding

CONACYT-SEP 236066
6 · The paper itself

Abstract

The surface of aboveground plant parts, known as the phyllosphere, is a habitat for various microorganisms called epiphytes establishing biotrophic interactions with their hosts. However, these communities can be affected by environmental and anthropogenic variations such as the application of agrochemicals. Thus, epiphytes have the capacity to survive in such environments. In this study, we obtained the genome of Pseudomonas sp. 14A, an epiphyte isolated from the pepper phyllosphere. The phylogenomic analyses suggested that Pseudomonas sp. 14A may be novel species closely related to P. moraviensis R28-S. Notably, the metabolic pathways proposed consistent with epiphytic lifestyle in Pseudomonas sp. 14A, were shared with other species displaying a different degree of phylogenetic relatedness. Furthermore, variations in configuration of metabolic gene clusters were observed, that could expand microbial metabolic diversity in close relatedness species, highlighting the relevance of microbial diversity associated with plants.

Indexed as

Genome, BacterialAdaptation, PhysiologicalDNA, BacterialGene Expression Regulation, BacterialGenome-Wide Association StudyPhylogenyPseudomonasSpecies SpecificityDNA, BacterialBacterial genomicsMicrobial diversityMicrobial secondary metabolitesPhyllospherePlant-microorganism interaction

Identifiers

PMID35098385
OpenAlexW4210750823

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.