Evidence map›Paper›PMID 35095803›Full record

ArticleFrontiers in microbiology2021

Low-Cost Clamp-On Photometers (ClampOD) and Tube Photometers (TubeOD) for Online Cell Density Determination.

Jörg S Deutzmann, Grace Callander, Wenyu Gu, Albert L Müller, Alexandra L McCully, Jenna Kim Ahn, Frauke Kracke, Alfred M Spormann

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jörg S DeutzmannCivil and Environmental Engineering, Stanford University, Stanford, CA, United States.
Grace CallanderChemical Engineering, Stanford University, Stanford, CA, United States.
Wenyu GuCivil and Environmental Engineering, Stanford University, Stanford, CA, United States.
Albert L MüllerCivil and Environmental Engineering, Stanford University, Stanford, CA, United States.
Alexandra L McCullyCivil and Environmental Engineering, Stanford University, Stanford, CA, United States.
Jenna Kim AhnChemical Engineering, Stanford University, Stanford, CA, United States.
Frauke KrackeCivil and Environmental Engineering, Stanford University, Stanford, CA, United States.
Alfred M SpormannCivil and Environmental Engineering, Stanford University, Stanford, CA, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Optical density (OD) measurement is the gold standard to estimate microbial cell density in aqueous systems. Recording microbial growth curves is essential to assess substrate utilization, gauge sensitivity to inhibitors or toxins, or determine the perfect sampling point. Manual sampling for cuvette-photometer-based measurements can cause disturbances and impact growth, especially for strictly anaerobic or thermophilic microbes. For slow growing microbes, manual sampling can cause data gaps that complicate analysis. Online OD measurement systems provide a solution, but are often expensive and ill-suited for applications such as monitoring microbial growth in custom or larger anaerobic vessels. Furthermore, growth measurements of thermophilic cultures are limited by the heat sensitivity of complex electronics. Here, we present two simple, low-cost, self-assembled photometers-a "TubeOD" for online measurement of anaerobic and thermophilic cultures in Hungate tubes and a "ClampOD" that can be attached to virtually any transparent growth vessel. Both OD-meters can be calibrated in minutes. We detail the manufacturing and calibration procedure and demonstrate continuous acquisition of high quality cell density data of a variety of microbes, including strict anaerobes, a thermophile, and gas-utilizing strains in various glassware. When calibrated and operated within their detection limits (ca. 0.3-90% of the photosensor voltage range), these self-build OD-meters can be used for continuous measurement of microbial growth in a variety of applications, thereby, simplifying and enhancing everyday lab operations.

Indexed as

anaerobic growth monitoringcontinuous cell density measurementlow-costonline growth recordingonline thermophilic growth monitoringphotometer

Identifiers

PMID35095803
PMCPMC8793360

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.