Evidence map›Paper›PMID 35094337›Full record

ArticleMethods in molecular biology (Clifton, N.J.)

Self-Induced Back-Action Actuated Nanopore Electrophoresis (SANE) Sensor for Label-Free Detection of Cancer Immunotherapy-Relevant Antibody-Ligand Interactions.

Sai Santosh Sasank Peri, Muhammad Usman Raza, Manoj K Sabnani, Soroush Ghaffari, Susanne Gimlin, Debra D Wawro, Jung Soo Lee, Min Jun Kim, Jon Weidanz, George Alexandrakis

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.). The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.3field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Sai Santosh Sasank PeriDepartment of Electrical Engineering, University of Texas at Arlington, Arlington, TX, USA.
Muhammad Usman RazaDepartment of Electrical Engineering, University of Texas at Arlington, Arlington, TX, USA.
Manoj K SabnaniDepartment of Biology, University of Texas at Arlington, Arlington, TX, USA.
Soroush GhaffariDepartment of Biology, University of Texas at Arlington, Arlington, TX, USA.
Susanne GimlinResonant Sensors Incorporated (RSI), Arlington, TX, USA.
Debra D WawroResonant Sensors Incorporated (RSI), Arlington, TX, USA.
Jung Soo LeeDepartment of Mechanical Engineering, Southern Methodist University, Dallas, TX, USA.
Min Jun KimDepartment of Mechanical Engineering, Southern Methodist University, Dallas, TX, USA.
Jon WeidanzDepartment of Kinesiology, University of Texas at Arlington, Arlington, TX, USA.
George AlexandrakisDepartment of Bioengineering, University of Texas at Arlington, Arlington, TX, USA. galex@uta.edu.
The University of Texas at Arlington · USResonant Sensors (United States) · USSouthern Methodist University · US

Funding

Nanotechnology Enabled Selection of MHC-Peptide Ligands to Personalize Cancer TherapyR21CA240220 · NCI · UNIVERSITY OF TEXAS ARLINGTON · PI ALEXANDRAKIS, GEORGIOS · 2020 to 2021
$594k
NCI NIH HHS R21 CA240220
6 · The paper itself

Abstract

We fabricated a novel single molecule nanosensor by integrating a solid-state nanopore and a double nanohole nanoaperture. The nanosensor employs Self-Induced Back-Action (SIBA) for optical trapping and enables SIBA-Actuated Nanopore Electrophoresis (SANE) for concurrent acquisition of bimodal optical and electrical signatures of molecular interactions. This work describes how to fabricate and use the SANE sensor to quantify antibody-ligand interactions. We describe how to analyze the bimodal optical-electrical data to improve upon the discrimination of antibody and ligand versus bound complex compared to electrical measurements alone. Example results for specific interaction detection are described for T-cell receptor-like antibodies (TCRmAbs) engineered to target peptide-presenting Major Histocompatibility Complex (pMHC) ligands, representing a model of target ligands presented on the surface of cancer cells. We also describe how to analyze the bimodal optical-electrical data to discriminate between specific and non-specific interactions between antibodies and ligands. Example results for non-specific interactions are shown for cancer-irrelevant TCRmAbs targeting the same pMHCs, as a control. These example results demonstrate the utility of the SANE sensor as a potential screening tool for ligand targets in cancer immunotherapy, though we believe that its potential uses are much broader.

Indexed as

NanoporesNeoplasmsElectrophoresisImmunotherapyLigandsNanotechnologyLigandsAntibody-ligand interactionsDual modality nanosensingDual nanoholesNanopore translocationsPeptide major histocompatibility complexes (pMHCs)Plasmonic optical trappingSolid-state nanoporesTCR-like monoclonal antibodies

Identifiers

PMID35094337
PMCPMC9207820
OpenAlexW4210633707

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.