Evidence map›Paper›PMID 35094334›Full record

ArticleMethods in molecular biology (Clifton, N.J.)

Green Chemistry Preservation and Extraction of Biospecimens for Multi-omic Analyses.

Andrey P Tikunov, Jeremiah D Tipton, Timothy J Garrett, Sachi V Shinde, Hong Jin Kim, David A Gerber, Laura E Herring, Lee M Graves, Jeffrey M Macdonald

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.). The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Andrey P TikunovDepartments of Biomedical Engineering, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Jeremiah D TiptonDepartments of Biomedical Engineering, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Timothy J GarrettDepartment of Pathology, Immunology and Laboratory Medicine, University of Florida, College of Medicine, Gainesville, FL, USA.
Sachi V ShindeDepartments of Biomedical Engineering, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Hong Jin KimDepartments of Surgery, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
David A GerberDepartments of Surgery, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Laura E HerringDepartments of Pharmacology, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Lee M GravesDepartments of Pharmacology, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Jeffrey M MacdonaldDepartments of Biomedical Engineering, University of North Carolina School of Medicine, Chapel Hill, NC, USA. Jeffrey_Macdonald@med.unc.edu.
University of North Carolina at Chapel Hill · USUniversity of Florida · US

Funding

Elucidating the mechanism of action of novel ClpP activators in activation of the mitochondrial unfolded protein response.R01GM138520 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GRAVES, LEE M · 2020 to 2023
$1.3M
NIGMS NIH HHS R01 GM138520
6 · The paper itself

Abstract

The Environmental Protection Agency's definition of "Green Chemistry" is "the design of chemical products and processes that reduces or eliminates the use or generation of hazardous substances. Green chemistry applies across the life cycle of a chemical product, including its design, manufacture, use, and ultimate disposal." Conventional omic tissue extraction procedures use solvents that are toxic and carcinogenic, such as chloroform and methyl-tert-butyl ether for lipidomics, or caustic chaotropic solutions for genomics and transcriptomics, such as guanidine or urea. A common preservation solution for pathology is formaldehyde, which is a carcinogen. Use of acetonitrile as a universal biospecimen preservation and extraction solvent will reduce these hazardous wastes, because it is less toxic and more environmentally friendly than the conventional solvents used in biorepository and biospecimen research. A new extraction method never applied to multi-omic, system biology research, called cold-induced phase separation (CIPS), uses freezing point temperatures to induce a phase separation of acetonitrile-water mixtures. Also, the CO

Indexed as

LipidomicsMetabolomicsChromatography, LiquidMass SpectrometrySolventsSolventsAcetonitrileBiospecimenCIPSGreen chemistryLipidomicMetabolomicsMulti-OmicsProteomicsQuEChERSSwitchable solvent

Identifiers

PMID35094334
OpenAlexW4210269148

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.