Evidence map›Paper›PMID 35092374›Full record

ArticleAsian Pacific journal of cancer prevention : APJCP2022

Association between VDR Gene Polymorphisms and Melanoma Susceptibility in a Colombian Population.

Andres Felipe Aristizabal-Pachon, Yeimy Gonzalez-Giraldo, Angela Yazmin Garcia, Dalia Xiomara Suarez, Angela Rodriguez, Janneth Gonzalez-Santos

Open access · goldAbstract read
In one paragraph

Article in Asian Pacific journal of cancer prevention : APJCP, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 2 pooled it
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 2 syntheses or guidelines pooled it, 5 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Andres Felipe Aristizabal-PachonDepartment of Nutrition and Biochemistry, Faculty of Sciences, Pontificia Universidad Javeriana, Bogotá DC, Colombia.ORCID 0000-0003-3004-4867
Yeimy Gonzalez-GiraldoDepartment of Nutrition and Biochemistry, Faculty of Sciences, Pontificia Universidad Javeriana, Bogotá DC, Colombia.
Angela Yazmin GarciaDepartment of Nutrition and Biochemistry, Faculty of Sciences, Pontificia Universidad Javeriana, Bogotá DC, Colombia.
Dalia Xiomara SuarezUniversity of Cundinamarca, Colombia.
Angela RodriguezPedagogical and Technological University of Colombia.
Janneth Gonzalez-SantosDepartment of Nutrition and Biochemistry, Faculty of Sciences, Pontificia Universidad Javeriana, Bogotá DC, Colombia.ORCID 0000-0003-2009-3374
Pontificia Universidad Javeriana · COPedagogical and Technological University of Colombia · COUniversity of Cundinamarca · CO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe vitamin D receptor (VDR) is responsible for mediating the effects of vitamin D through regulation of other gene transcriptions. There are several polymorphisms that alter the gene expression or the function of this protein. We aimed to analyze the association between two SNPs  of VDR gene and melanoma cancer in Colombian patients.

methodsWe included 120 healthy individual as controls and 120 melanoma cancer patients as cases . Patients in both groups were matched in terms of gender and age. The genotyping of rs731236 and rs2228570 polymorphisms was performed using PCR-RFLP. The SNPStats program was used to carry out the statistical analysis through a logistic regression model.

resultsUnder dominant model, we found that rs2228570 polymorphism was associated with melanoma cancer risk (C/C vs C/T-T/T, OR: 5.10, 95% CI: 2.85-9.14), whereas rs731236 polymorphism was associated with a protective effect against this cancer (T/T vs T/C, OR: 0.27, 95% CI: 0.14-0.53).

conclusionOur results suggested that both polymorphisms were involved in the development of melanoma cancer, increasing or decreasing this risk.

Indexed as

Case-Control StudiesColombiaEthnicityFemaleGenetic Predisposition to DiseaseGenotypeHumansMaleMelanomaMiddle AgedPolymorphism, Restriction Fragment LengthPolymorphism, Single NucleotideReceptors, CalcitriolReceptors, CalcitriolVDR protein, humancancerFok1 and Taq1 polymorphismsPCR-RFLPsrs2228570rs731236

Identifiers

PMID35092374
PMCPMC9258646
OpenAlexW4210308626

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.