Evidence map›Paper›PMID 35091565›Full record

ArticleNature communications2022

Structure of Vibrio collagenase VhaC provides insight into the mechanism of bacterial collagenolysis.

Yan Wang, Peng Wang, Hai-Yan Cao, Hai-Tao Ding, Hai-Nan Su, Shi-Cheng Liu, Guangfeng Liu, Xia Zhang, Chun-Yang Li, Ming Peng and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. High Proteolytic and Collagenolytic Activity in an EnvironmentalInternational journal of molecular sciences · 2025
    Article
  4. Catechol redox maintenance in mussel adhesion.Nature reviews. Chemistry · 2025
    Review
  5. Article
  6. Thermostable Bacterial Collagenolytic Proteases: A Review.Journal of microbiology and biotechnology · 2024
    Review
  7. Heparan sulfate selectively inhibits the collagenase activity of cathepsin K.Matrix biology : journal of the International Society for Matrix Biology · 2024
    Article
  8. A conserved strategy to attack collagen: The activator domain in bacterial collagenases unwinds triple-helical collagen.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Yan Wang *State Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Peng Wang *College of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, 266003, China.
Hai-Yan CaoState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Hai-Tao DingAntarctic Great Wall Ecology National Observation and Research Station, Polar Research Institute of China, Shanghai, 200136, China.
Hai-Nan SuState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Shi-Cheng LiuDepartment of Molecular Biology, Qingdao Vland Biotech Inc., Qingdao, China.
Guangfeng LiuNational Center for Protein Science Shanghai, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai, 201210, China.
Xia ZhangDepartment of Molecular Biology, Qingdao Vland Biotech Inc., Qingdao, China.
Chun-Yang LiCollege of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, 266003, China.
Ming PengState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Fuchuan LiNational Glycoengineering Research Center and Shandong Key Laboratory of Carbohydrate Chemistry and Glycobiology, Shandong University, Qingdao, China.ORCID http://orcid.org/0000-0003-1920-9691
Shengying LiState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.ORCID http://orcid.org/0000-0002-5244-870X
Yin ChenCollege of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, 266003, China.ORCID http://orcid.org/0000-0002-0367-4276
Xiu-Lan ChenState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China. cxl0423@sdu.edu.cn.ORCID http://orcid.org/0000-0003-2991-3631
Yu-Zhong ZhangCollege of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, 266003, China. zhangyz@sdu.edu.cn.ORCID http://orcid.org/0000-0002-2017-1005
Shandong University · CNQingdao National Laboratory for Marine Science and Technology · CNChinese Academy of Sciences · CNPolar Research Institute of China · CNUniversity of Warwick · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The collagenases of Vibrio species, many of which are pathogens, have been regarded as an important virulence factor. However, there is little information on the structure and collagenolytic mechanism of Vibrio collagenase. Here, we report the crystal structure of the collagenase module (CM) of Vibrio collagenase VhaC and the conformation of VhaC in solution. Structural and biochemical analyses and molecular dynamics studies reveal that triple-helical collagen is initially recognized by the activator domain, followed by subsequent cleavage by the peptidase domain along with the closing movement of CM. This is different from the peptidolytic mode or the proposed collagenolysis of Clostridium collagenase. We propose a model for the integrated collagenolytic mechanism of VhaC, integrating the functions of VhaC accessory domains and its collagen degradation pattern. This study provides insight into the mechanism of bacterial collagenolysis and helps in structure-based drug design targeting of the Vibrio collagenase.

Indexed as

Protein ConformationAmino Acid SequenceBacterial ProteinsBinding SitesBiocatalysisChromatography, LiquidCollagenCollagenasesCrystallography, X-RayMass SpectrometryMicroscopy, Atomic ForceMolecular Dynamics SimulationPeptidesProtein BindingVibrioBacterial ProteinsCollagenCollagenasesPeptides

Identifiers

PMID35091565
PMCPMC8799719
OpenAlexW4210293340

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.