Evidence map›Paper›PMID 35089078›Full record

ArticlemBio2022

A Retrotranslocation Assay That Predicts Defective VCP/p97-Mediated Trafficking of a Retroviral Signal Peptide.

Poulami Das, Wendy Kaichun Xu, Amit Kumar Singh Gautam, Mary M Lozano, Jaquelin P Dudley

Open access · goldAbstract read
In one paragraph

Article in mBio, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
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  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Poulami DasDepartment of Molecular Biosciences, The University of Texas at Austingrid.89336.37, Austin, Texas, USA.
Wendy Kaichun XuDepartment of Molecular Biosciences, The University of Texas at Austingrid.89336.37, Austin, Texas, USA.ORCID 0000-0002-5866-3523
Amit Kumar Singh GautamDepartment of Molecular Biosciences, The University of Texas at Austingrid.89336.37, Austin, Texas, USA.
Mary M LozanoDepartment of Molecular Biosciences, The University of Texas at Austingrid.89336.37, Austin, Texas, USA.
Jaquelin P DudleyDepartment of Molecular Biosciences, The University of Texas at Austingrid.89336.37, Austin, Texas, USA.ORCID 0000-0002-1581-1098
The University of Texas at Austin · US

Funding

Role of Apobecs in Retroviral ImmunityR01AI131660 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI DUDLEY, JAQUELIN PAGE · 2017 to 2021
$2.3M
Retroviral Subversion of ERAD and Intrinsic ImmunityR01CA167053 · NCI · UNIVERSITY OF TEXAS AT AUSTIN · PI DUDLEY, JAQUELIN PAGE · 2012 to 2016
$1.8M
NCI NIH HHS R01 CA167053NIAID NIH HHS R01 AI131660
6 · The paper itself

Abstract

Studies of viral replication have provided critical insights into host processes, including protein trafficking and turnover. Mouse mammary tumor virus (MMTV) is a betaretrovirus that encodes a functional 98-amino-acid signal peptide (SP). MMTV SP is generated from both Rem and envelope precursor proteins by signal peptidase cleavage in the endoplasmic reticulum (ER) membrane. We previously showed that SP functions as a human immunodeficiency virus type 1 (HIV-1) Rev-like protein that is dependent on the AAA ATPase valosin-containing protein (VCP)/p97 to subvert ER-associated degradation (ERAD). SP contains a nuclear localization sequence (NLS)/nucleolar localization sequence (NoLS) within the N-terminal 45 amino acids. To directly determine the SP regions needed for membrane extraction and trafficking, we developed a quantitative retrotranslocation assay with biotin acceptor peptide (BAP)-tagged SP proteins. Use of alanine substitution mutants of BAP-tagged MMTV SP in retrotranslocation assays revealed that mutation of amino acids 57 and 58 (M57-58) interfered with ER membrane extraction, whereas adjacent mutations did not. The M57-58 mutant also showed reduced interaction with VCP/p97 in coimmunoprecipitation experiments. Using transfection and reporter assays to measure activity of BAP-tagged proteins, both M57-58 and an adjacent mutant (M59-61) were functionally defective compared to wild-type SP. Confocal microscopy revealed defects in SP nuclear trafficking and abnormal localization of both M57-58 and M59-61. Furthermore, purified glutathione

Indexed as

Endoplasmic Reticulum-Associated DegradationProtein Sorting SignalsAmino AcidsAnimalsCell Cycle ProteinsCell NucleusHumansMammary Tumor Virus, MouseMiceValosin Containing ProteinAmino AcidsCell Cycle ProteinsProtein Sorting SignalsValosin Containing ProteinVCP protein, humanbetaretrovirusERADmouse mammary tumor virusp97protein traffickingretro translocationsignal peptideVCPVCP/p97

Identifiers

PMID35089078
PMCPMC8725593
OpenAlexW4220906380

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.