Evidence map›Paper›PMID 35089059›Full record

ArticlemBio2022

Chromosome-Level Genome Assembly of a Human Fungal Pathogen Reveals Synteny among Geographically Distinct Species.

Mark Voorhies, Shirli Cohen, Terrance P Shea, Semar Petrus, José F Muñoz, Shane Poplawski, William E Goldman, Todd P Michael, Christina A Cuomo, Anita Sil and 1 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Telomeric assemblies ofbioRxiv : the preprint server for biology · 2025
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Genotypic diversity, virulence, and molecular genetic tools inMicrobiology and molecular biology reviews : MMBR · 2024
    Review
  17. Article
  18. Phenotypic characterization of cryptic species in the fungal pathogenbioRxiv : the preprint server for biology · 2024
    Article
  19. Genetic Diversity of Human Fungal Pathogens.Current clinical microbiology reports · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Mark Voorhies *Department of Microbiology and Immunology, University of California, San Franciscogrid.266102.1, San Francisco, California, USA.
Shirli Cohen *Department of Infectious Diseases, J. Craig Venter Institute, La Jolla, California, USA.
Terrance P SheaBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Semar PetrusDepartment of Infectious Diseases, J. Craig Venter Institute, La Jolla, California, USA.
José F MuñozBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.ORCID 0000-0003-4987-7957
Shane PoplawskiDepartment of Infectious Diseases, J. Craig Venter Institute, La Jolla, California, USA.
William E GoldmanDepartment of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Todd P MichaelDepartment of Infectious Diseases, J. Craig Venter Institute, La Jolla, California, USA.
Christina A CuomoBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Anita SilDepartment of Microbiology and Immunology, University of California, San Franciscogrid.266102.1, San Francisco, California, USA.
Sinem BeyhanDepartment of Infectious Diseases, J. Craig Venter Institute, La Jolla, California, USA.ORCID 0000-0003-0906-7538
J. Craig Venter Institute · USBroad Institute · USUniversity of California, San Francisco · USUniversity of North Carolina at Chapel Hill · US

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI EARL, ASHLEE MIRIAM · 2014 to 2024
$66.5M
Gene circuits that control morphology in HistoplasmaR37AI066224 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Anita Sil · 2020 to 2026
$3.3M
Interplay between the heat shock response and histidine kinase pathways in the thermally dimorphic fungal pathogen Histoplasma capsulatumR01AI137418 · NIAID · J. CRAIG VENTER INSTITUTE, INC. · PI BEYHAN, SINEM · 2018 to 2023
$2.4M
NIAID NIH HHS R01 AI137418NIAID NIH HHS R37 AI066224NIAID NIH HHS U19 AI110818
6 · The paper itself

Abstract

Histoplasma capsulatum, a dimorphic fungal pathogen, is the most common cause of fungal respiratory infections in immunocompetent hosts.

Indexed as

HistoplasmaMycosesAustraliaChromosomesGenome, FungalHumansSaccharomyces cerevisiaeSyntenygenome assemblyHistoplasma capsulatumlong-read sequencing

Identifiers

PMID35089059
PMCPMC8725592
OpenAlexW4221004516

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.