ArticleBMC plant biology2022
Genome-wide association study for seedling biomass-related traits in Gossypium arboreum L.
Article in BMC plant biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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Who cites it
7 citing papers in PubMed.
- Uncovering the genetic architecture of biomass yield and related traits in Southern US oat germplasm using genome-wide association study.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Development of a Liquid-Phased Probe Array for Upland Cotton and Its Application in Cultivar Identification.Genes · 2025Article
- A genome-wide investigation of insidious uveitis in Appaloosa horses.BMC genomics · 2025Article
- Genome-wide association study identifies the genetic basis of key agronomic traits in 207 sugar beet accessions.Horticulture research · 2024Article
- Integrative analyses of long and short-read RNA sequencing reveal the spliced isoform regulatory network of seedling growth dynamics in upland cotton.Functional & integrative genomics · 2024Article
- GWAS determined genetic loci associated with callus induction in oil palm tissue culture.Plant cell reports · 2024Article
- Status and prospects of genome-wide association studies in cotton.Frontiers in plant science · 2022Review
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Authors and funding
13 authors.
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Abstract
backgroundSeedling stage plant biomass is usually used as an auxiliary trait to study plant growth and development or stress adversities. However, few molecular markers and candidate genes of seedling biomass-related traits were found in cotton.
resultHere, we collected 215 Gossypium arboreum accessions, and investigated 11 seedling biomass-related traits including the fresh weight, dry weight, water content, and root shoot ratio. A genome-wide association study (GWAS) utilizing 142,5003 high-quality SNPs identified 83 significant associations and 69 putative candidate genes. Furthermore, the transcriptome profile of the candidate genes emphasized higher expression of Ga03G1298, Ga09G2054, Ga10G1342, Ga11G0096, and Ga11G2490 in four representative cotton accessions. The relative expression levels of those five genes were further verified by qRT-PCR.
conclusionsThe significant SNPs, candidate genes identified in this study are expected to lay a foundation for studying the molecular mechanism for early biomass development and related traits in Asian cotton.
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