Evidence map›Paper›PMID 35085386›Full record

ArticleJournal of experimental botany2022

Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots.

Ren Wang, Ellie Himschoot, Matteo Grenzi, Jian Chen, Alaeddine Safi, Melanie Krebs, Karin Schumacher, Moritz K Nowack, Wolfgang Moeder, Keiko Yoshioka and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 6 countries.

Ren WangDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.
Ellie HimschootDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.ORCID 0000-0002-7482-7364
Matteo GrenziDepartment of Biosciences, University of Milan, 20133 Milan, Italy.ORCID 0000-0003-2295-0018
Jian ChenDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.
Alaeddine SafiDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.ORCID 0000-0003-1532-5708
Melanie KrebsCentre for Organismal Studies, Plant Developmental Biology, University of Heidelberg, 69120 Heidelberg, Germany.ORCID 0000-0001-6858-3247
Karin SchumacherCentre for Organismal Studies, Plant Developmental Biology, University of Heidelberg, 69120 Heidelberg, Germany.ORCID 0000-0001-6484-8105
Moritz K NowackDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.ORCID 0000-0001-8918-7577
Wolfgang MoederDepartment of Cell and Systems Biology, University of Toronto, Toronto, ON M5S 3B2, Canada.ORCID 0000-0003-3889-6183
Keiko YoshiokaDepartment of Cell and Systems Biology, University of Toronto, Toronto, ON M5S 3B2, Canada.ORCID 0000-0002-3797-4277
Daniël Van DammeDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.ORCID 0000-0002-9385-4851
Ive De SmetDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.ORCID 0000-0003-4607-8893
Danny GeelenDepartment of Plants and Crops, Ghent University, 9000 Ghent, Belgium.ORCID 0000-0001-8105-3937
Tom BeeckmanDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.ORCID 0000-0001-8656-2060
Jiří FrimlInstitute of Science and Technology Austria (IST Austria), 3400 Klosterneuburg, Austria.ORCID 0000-0002-8302-7596
Alex CostaDepartment of Biosciences, University of Milan, 20133 Milan, Italy.ORCID 0000-0002-2628-1176
Steffen VannesteDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.ORCID 0000-0002-9948-9672
Ghent University · BEHeidelberg University · DEUniversity of Milan · ITUniversity of Toronto · CAInstitute of Science and Technology Austria · AT

Funding

China Scholarship CouncilDeutsche Forschungsgemeinschaft FOR964European Research Council 682436European Research Council T-Rex 682436Fonds Wetenschappelijk OnderzoekGhent UniversityPiano di Sviluppo di Ateneo 2019University of Milan
6 · The paper itself

Abstract

Much of what we know about the role of auxin in plant development derives from exogenous manipulations of auxin distribution and signaling, using inhibitors, auxins, and auxin analogs. In this context, synthetic auxin analogs, such as 1-naphthalene acetic acid (1-NAA), are often favored over the endogenous auxin, indole-3-acetic acid (IAA), in part due to their higher stability. While such auxin analogs have proven instrumental in revealing the various faces of auxin, they display in some cases bioactivities distinct from IAA. Here, we focused on the effect of auxin analogs on the accumulation of PIN proteins in brefeldin A-sensitive endosomal aggregations (BFA bodies), and correlation with the ability to elicit Ca2+ responses. For a set of commonly used auxin analogs, we evaluated if auxin analog-induced Ca2+ signaling inhibits PIN accumulation. Not all auxin analogs elicited a Ca2+ response, and their differential ability to elicit Ca2+ responses correlated partially with their ability to inhibit BFA-body formation. However, in tir1/afb and cngc14, 1-NAA-induced Ca2+ signaling was strongly impaired, yet 1-NAA still could inhibit PIN accumulation in BFA bodies. This demonstrates that TIR1/AFB-CNGC14-dependent Ca2+ signaling does not inhibit BFA body formation in Arabidopsis roots.

Indexed as

ArabidopsisArabidopsis ProteinsCalciumIndoleacetic AcidsPlant Growth RegulatorsPlant RootsArabidopsis ProteinsCalciumIndoleacetic AcidsPlant Growth RegulatorsArabidopsisauxin analogscalciumendosomesPIN proteinrootsignalingtrafficking

Identifiers

PMID35085386
PMCPMC7612644
OpenAlexW4210560972

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.