Evidence map›Paper›PMID 35084593›Full record

ArticlePlanta2022

Transcript profiles of wild and domesticated sorghum under water-stressed conditions and the differential impact on dhurrin metabolism.

Galaihalage K S Ananda, Sally L Norton, Cecilia Blomstedt, Agnelo Furtado, Birger Lindberg Møller, Roslyn Gleadow, Robert J Henry

Open access · hybridAbstract read
In one paragraph

Article in Planta, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Two alternative splicing variants of a wheat geneFrontiers in plant science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Galaihalage K S AnandaQueensland Alliance for Agriculture and Food Innovation, The University of Queensland, St Lucia, QLD, Australia.ORCID http://orcid.org/0000-0002-3917-5786
Sally L NortonAustralian Grains Genebank, Agriculture Victoria, Horsham, VIC, Australia.ORCID http://orcid.org/0000-0002-2452-7275
Cecilia BlomstedtSchool of Biological Sciences, Monash University, Clayton, VIC, Australia.ORCID http://orcid.org/0000-0003-1919-6982
Agnelo FurtadoQueensland Alliance for Agriculture and Food Innovation, The University of Queensland, St Lucia, QLD, Australia.ORCID http://orcid.org/0000-0001-6130-9026
Birger Lindberg MøllerPlant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-3252-3119
Roslyn GleadowQueensland Alliance for Agriculture and Food Innovation, The University of Queensland, St Lucia, QLD, Australia.ORCID http://orcid.org/0000-0003-4756-0411
Robert J HenryQueensland Alliance for Agriculture and Food Innovation, The University of Queensland, St Lucia, QLD, Australia. robert.henry@uq.edu.au.ORCID http://orcid.org/0000-0002-4060-0292
The University of Queensland · AUAgriculture Victoria · AUMonash University · AUUniversity of Copenhagen · DK

Funding

Australian Research Council DP180101011
6 · The paper itself

Abstract

MAIN

conclusionAustralian native species of sorghum contain negligible amounts of dhurrin in their leaves and the cyanogenesis process is regulated differently under water-stress in comparison to domesticated sorghum species. Cyanogenesis in forage sorghum is a major concern in agriculture as the leaves of domesticated sorghum are potentially toxic to livestock, especially at times of drought which induces increased production of the cyanogenic glucoside dhurrin. The wild sorghum species endemic to Australia have a negligible content of dhurrin in the above ground tissues and thus represent a potential resource for key agricultural traits like low toxicity. In this study we investigated the differential expression of cyanogenesis related genes in the leaf tissue of the domesticated species Sorghum bicolor and the Australian native wild species Sorghum macrospermum grown in glasshouse-controlled water-stress conditions using RNA-Seq analysis to analyse gene expression. The study identified genes, including those in the cyanogenesis pathway, that were differentially regulated in response to water-stress in domesticated and wild sorghum. In the domesticated sorghum, dhurrin content was significantly higher compared to that in the wild sorghum and increased with stress and decreased with age whereas in wild sorghum the dhurrin content remained negligible. The key genes in dhurrin biosynthesis, CYP79A1, CYP71E1 and UGT85B1, were shown to be highly expressed in S. bicolor. DHR and HNL encoding the dhurrinase and α-hydroxynitrilase catalysing bio-activation of dhurrin were also highly expressed in S. bicolor. Analysis of the differences in expression of cyanogenesis related genes between domesticated and wild sorghum species may allow the use of these genetic resources to produce more acyanogenic varieties in the future.

Indexed as

SorghumAustraliaEdible GrainNitrilesWaterdhurrinNitrilesWaterCyanogenesisDhurrin metabolismGene expressionSorghumWater-stressWild sorghum

Identifiers

PMID35084593
PMCPMC8795013
OpenAlexW4210377258

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.