Evidence map›Paper›PMID 35084545›Full record

ArticleWorld journal of urology2022

Proteomic profiling of cisplatin-resistant and cisplatin-sensitive germ cell tumour cell lines using quantitative mass spectrometry.

A Fichtner, H Bohnenberger, O Elakad, A Richter, C Lenz, C Oing, P Ströbel, S Kueffer, D Nettersheim, F Bremmer

Open access · hybridAbstract read
In one paragraph

Article in World journal of urology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Biomarkers for Salvage Therapy in Testicular Germ Cell Tumors.International journal of molecular sciences · 2023
    Review
  3. Review
  4. Special Issue on Testis Cancer.World journal of urology · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

A Fichtner *Institute of Pathology, University Medical Center, Robert-Koch-Str. 40, 37075, Göttingen, Germany.
H Bohnenberger *Institute of Pathology, University Medical Center, Robert-Koch-Str. 40, 37075, Göttingen, Germany.
O ElakadInstitute of Pathology, University Medical Center, Robert-Koch-Str. 40, 37075, Göttingen, Germany.
A RichterInstitute of Pathology, University Medical Center, Robert-Koch-Str. 40, 37075, Göttingen, Germany.
C LenzDepartment of Clinical Chemistry, University Medical Center, Göttingen, Germany.
C OingDepartment of Oncology, Hematology and Bone Marrow Transplantation with Division of Pneumology, University Medical Center Hamburg-Eppendorf, Martinistraße 52, 20246, Hamburg, Germany.
P StröbelInstitute of Pathology, University Medical Center, Robert-Koch-Str. 40, 37075, Göttingen, Germany.
S Kueffer *Institute of Pathology, University Medical Center, Robert-Koch-Str. 40, 37075, Göttingen, Germany.
D Nettersheim *Department of Urology, Urological Research Laboratory, Translational UroOncology, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Universitätsstrasse 1, 40225, Düsseldorf, Germany.
F Bremmer *Institute of Pathology, University Medical Center, Robert-Koch-Str. 40, 37075, Göttingen, Germany. felix.bremmer@med.uni-goettingen.de.ORCID http://orcid.org/0000-0003-0367-6527
Universitätsmedizin Göttingen · DEDüsseldorf University Hospital · DEUniversität Hamburg · DE

Funding

Deutsche Krebshilfe 70112551Wilhelm Sander-Stiftung 2016.041.1Wilhelm Sander-Stiftung 2016.041.2Wilhelm Sander-Stiftung 2016.041.3
6 · The paper itself

Abstract

purposeAdvanced testicular germ cell tumours (GCT) generally have a good prognosis owing to their unique sensitivity towards cisplatin-based chemotherapies. However, cisplatin-resistant GCT have a poor outcome. Further studies are mandatory to better understand resistance mechanisms and develop therapeutic strategies for refractory GCTs.

methodsProtein levels in cisplatin-resistant GCT cell lines of NTERA-2, NCCIT and 2102EP were analyzed by quantitative proteomic mass spectrometry (MS) in combination with stable isotope labelling by amino acids in cell culture (SILAC). Differentially abundant protein markers of acquired cisplatin resistance were validated by Western blotting. Comprehensive bioinformatical annotation using gene set enrichment analyses (GSEA) and STRING interaction analysis were performed to identify commonly affected pathways in cisplatin resistance and the data were compared to the GCT cohort of the 'The Cancer Genome Atlas'.

resultsA total of 4375 proteins were quantified by MS, 144 of which were found to be differentially abundant between isogenic resistant and sensitive cell line pairs (24 proteins for NTERA-2, 60 proteins for NCCIT, 75 proteins for 2102EP). Western blotting confirmed regulation of key resistance-associated proteins (CBS, ANXA1, LDHA, CTH, FDXR). GSEA revealed a statistically significant enrichment of DNA repair-associated proteins in all three resistant cell lines and specific additional processes for individual cell lines.

conclusionHigh resolution MS combined with SILAC is a powerful tool and 144 significantly deregulated proteins were found in cisplatin-resistant GCT cell lines. Our study provides the largest proteomic in vitro library for cisplatin resistance in GCT, yet, enabling further studies to develop new treatment options for patients with refractory GCT.

Indexed as

Antineoplastic AgentsNeoplasms, Germ Cell and EmbryonalTesticular NeoplasmsCell Line, TumorCisplatinDrug Resistance, NeoplasmHumansMaleMass SpectrometryProteomicsAntineoplastic AgentsCisplatinCisplatin resistanceGerm cell tumourMass spectrometryProteomic analysisSILAC

Identifiers

PMID35084545
PMCPMC8921118
OpenAlexW4210499714

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.