Evidence map›Paper›PMID 35082315›Full record

ArticleScientific reports2022

A loss-based patch label denoising method for improving whole-slide image analysis using a convolutional neural network.

Murtaza Ashraf, Willmer Rafell Quiñones Robles, Mujin Kim, Young Sin Ko, Mun Yong Yi

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In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  5. Deep learning with noisy labels in medical prediction problems: a scoping review.Journal of the American Medical Informatics Association : JAMIA · 2024
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  6. Article
  7. Review
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  12. Improving Representation Learning for Histopathologic Images with Cluster Constraints.Proceedings. IEEE International Conference on Computer Vision · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Murtaza AshrafDepartment of Industrial and Systems Engineering, Graduate School of Knowledge Service Engineering, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
Willmer Rafell Quiñones RoblesDepartment of Industrial and Systems Engineering, Graduate School of Knowledge Service Engineering, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
Mujin KimDepartment of Industrial and Systems Engineering, Graduate School of Knowledge Service Engineering, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
Young Sin KoPathology Center, Seegene Medical Foundation, Seoul, South Korea.
Mun Yong YiDepartment of Industrial and Systems Engineering, Graduate School of Knowledge Service Engineering, Korea Advanced Institute of Science and Technology, Daejeon, South Korea. munyi@kaist.ac.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This paper proposes a deep learning-based patch label denoising method (LossDiff) for improving the classification of whole-slide images of cancer using a convolutional neural network (CNN). Automated whole-slide image classification is often challenging, requiring a large amount of labeled data. Pathologists annotate the region of interest by marking malignant areas, which pose a high risk of introducing patch-based label noise by involving benign regions that are typically small in size within the malignant annotations, resulting in low classification accuracy with many Type-II errors. To overcome this critical problem, this paper presents a simple yet effective method for noisy patch classification. The proposed method, validated using stomach cancer images, provides a significant improvement compared to other existing methods in patch-based cancer classification, with accuracies of 98.81%, 97.30% and 89.47% for binary, ternary, and quaternary classes, respectively. Moreover, we conduct several experiments at different noise levels using a publicly available dataset to further demonstrate the robustness of the proposed method. Given the high cost of producing explicit annotations for whole-slide images and the unavoidable error-prone nature of the human annotation of medical images, the proposed method has practical implications for whole-slide image annotation and automated cancer diagnosis.

Identifiers

PMID35082315
PMCPMC8791954

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.