Evidence map›Paper›PMID 35081877›Full record

ArticleEmerging microbes & infections2022

Possible recombination between two variants of concern in a COVID-19 patient.

Yaqing He, Wentai Ma, Shengyuan Dang, Long Chen, Renli Zhang, Shujiang Mei, Xinyi Wei, Qiuying Lv, Bo Peng, Jiancheng Chen and 12 more

Open access · goldAbstract readLetter
In one paragraph

Article in Emerging microbes & infections, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

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  14. A 21L/BA.2-21K/BA.1 "MixOmicron" SARS-CoV-2 hybrid undetected by qPCR that screen for variant in routine diagnosis.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 2 institutions in 2 countries.

Yaqing HeShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Wentai MaKey Laboratory of Genomic and Precision Medicine, Beijing Institute of Genomics, Chinese Academy of Sciences, and China National Center for Bioinformation, Beijing, People's Republic of China.
Shengyuan DangNational Health Commission of the People's Republic of China Key Laboratory of Systems Biology of Pathogens and Christophe Mérieux Laboratory, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, People's Republic of China.
Long ChenShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Renli ZhangShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Shujiang MeiShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.ORCID 0000-0001-5976-9058
Xinyi WeiShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Qiuying LvShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Bo PengShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Jiancheng ChenShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Dongfeng KongShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Ying SunShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Xiujuan TangShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Weihua WuShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Zhigao ChenShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Shimin LiShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Jia WanShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Xuan ZouShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Mingkun LiKey Laboratory of Genomic and Precision Medicine, Beijing Institute of Genomics, Chinese Academy of Sciences, and China National Center for Bioinformation, Beijing, People's Republic of China.
Tiejian FengShenzhen Research Center for Communicable Disease Control and Prevention Chinese Academy of Medical Sciences, Shenzhen, People's Republic of China.
Lili RenNational Health Commission of the People's Republic of China Key Laboratory of Systems Biology of Pathogens and Christophe Mérieux Laboratory, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, People's Republic of China.ORCID 0000-0002-6645-8183
Jianwei WangNational Health Commission of the People's Republic of China Key Laboratory of Systems Biology of Pathogens and Christophe Mérieux Laboratory, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, People's Republic of China.ORCID 0000-0002-1116-4559
Chinese Academy of Medical Sciences & Peking Union Medical College · CNChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We identified an individual who was coinfected with two SARS-CoV-2 variants of concern, the Beta and Delta variants. The ratio of the relative abundance between the two variants was maintained at 1:9 (Beta:Delta) in 14 days. Furthermore, possible evidence of recombinations in the

Indexed as

COVID-19SARS-CoV-2HumansRecombination, GeneticSpike Glycoprotein, CoronavirusSpike Glycoprotein, Coronaviruscoinfectionintra-host single nucleotide variationsrecombinationSARS-CoV-2

Identifiers

PMID35081877
PMCPMC8843165
OpenAlexW4210588190

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.