Evidence map›Paper›PMID 35079017›Full record

ArticleNature communications2022

Nodal is a short-range morphogen with activity that spreads through a relay mechanism in human gastruloids.

Lizhong Liu, Anastasiia Nemashkalo, Luisa Rezende, Ji Yoon Jung, Sapna Chhabra, M Cecilia Guerra, Idse Heemskerk, Aryeh Warmflash

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lizhong LiuDepartment of Biosciences, Rice University, Houston, TX, USA.ORCID http://orcid.org/0000-0003-2244-289X
Anastasiia NemashkaloLos Alamos National Laboratory, CINT/B11 Division, Los Alamos, NM, USA.
Luisa RezendeDepartment of Biosciences, Rice University, Houston, TX, USA.
Ji Yoon JungDepartment of Biosciences, Rice University, Houston, TX, USA.
Sapna ChhabraDepartment of Biosciences, Rice University, Houston, TX, USA.
M Cecilia GuerraDepartment of Biosciences, Rice University, Houston, TX, USA.
Idse HeemskerkDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0002-8861-7712
Aryeh WarmflashDepartment of Biosciences, Rice University, Houston, TX, USA. aryeh.warmflash@rice.edu.ORCID http://orcid.org/0000-0002-5679-2268

Funding

Wnt pathway dynamics and their role in generating self-organized ectodermal patternsR01GM126122 · NIGMS · RICE UNIVERSITY · PI WARMFLASH, ARYEH · 2018 to 2022
$1.8M
NIGMS NIH HHS R01 GM126122
6 · The paper itself

Abstract

Morphogens are signaling molecules that convey positional information and dictate cell fates during development. Although ectopic expression in model organisms suggests that morphogen gradients form through diffusion, little is known about how morphogen gradients are created and interpreted during mammalian embryogenesis due to the combined difficulties of measuring endogenous morphogen levels and observing development in utero. Here we take advantage of a human gastruloid model to visualize endogenous Nodal protein in living cells, during specification of germ layers. We show that Nodal is extremely short range so that Nodal protein is limited to the immediate neighborhood of source cells. Nodal activity spreads through a relay mechanism in which Nodal production induces neighboring cells to transcribe Nodal. We further show that the Nodal inhibitor Lefty, while biochemically capable of long-range diffusion, also acts locally to control the timing of Nodal spread and therefore of mesoderm differentiation during patterning. Our study establishes a paradigm for tissue patterning by an activator-inhibitor pair.

Indexed as

BlastocystCell LineDiffusionFluorescent Antibody TechniqueGastrulaGastrulationGene Expression Regulation, DevelopmentalGene Knockout TechniquesHuman Embryonic Stem CellsHumansIn Situ Hybridization, FluorescenceLeft-Right Determination FactorsMicroscopy, ConfocalMicroscopy, FluorescenceNodal ProteinLeft-Right Determination FactorsNodal Protein

Identifiers

PMID35079017
PMCPMC8789905

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.