Evidence map›Paper›PMID 35078159›Full record

ReviewPhysical biology2022

Roadmap on plasticity and epigenetics in cancer.

Jasmine Foo, David Basanta, Russell C Rockne, Carly Strelez, Curran Shah, Kimya Ghaffarian, Shannon M Mumenthaler, Kelly Mitchell, Justin D Lathia, David Frankhouser and 14 more

Abstract readReview
In one paragraph

Review in Physical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Jasmine FooSchool of Mathematics, University of Minnesota, Twin Cities, MN 55455, United States of America.
David BasantaIntegrated Mathematical Oncology Department, Moffitt Cancer Center and Research Institute, Tampa, FL 33612, United States of America.ORCID 0000-0002-8527-0776
Russell C RockneDepartment of Computational and Quantitative Medicine, Division of Mathematical Oncology, City of Hope National Medical Center, Beckman Research Institute, Duarte, CA 91010, United States of America.ORCID 0000-0002-1557-159X
Carly StrelezLawrence J. Ellison Institute for Transformative Medicine, Los Angeles, CA 90064, United States of America.
Curran ShahLawrence J. Ellison Institute for Transformative Medicine, Los Angeles, CA 90064, United States of America.ORCID 0000-0001-5031-9501
Kimya GhaffarianLawrence J. Ellison Institute for Transformative Medicine, Los Angeles, CA 90064, United States of America.
Shannon M MumenthalerLawrence J. Ellison Institute for Transformative Medicine, Los Angeles, CA 90064, United States of America.ORCID 0000-0003-2687-3769
Kelly MitchellDepartment of Cardiovascular & Metabolic Sciences, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195, United States of America.ORCID 0000-0002-1124-7864
Justin D LathiaDepartment of Cardiovascular & Metabolic Sciences, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195, United States of America.
David FrankhouserDepartment of Population Sciences, City of Hope National Medical Center, Beckman Research Institute, Duarte, CA 91010, United States of America.ORCID 0000-0002-8233-5853
Sergio BranciamoreDepartment of Computational and Quantitative Medicine, Division of Mathematical Oncology, City of Hope National Medical Center, Beckman Research Institute, Duarte, CA 91010, United States of America.
Ya-Huei KuoDepartment of Hematologic Malignancies Translational Science, City of Hope National Medical Center, Beckman Research Institute, Duarte, CA 91010, United States of America.ORCID 0000-0003-2595-0419
Guido MarcucciDepartment of Hematologic Malignancies Translational Science, City of Hope National Medical Center, Beckman Research Institute, Duarte, CA 91010, United States of America.
Robert Vander VeldeDepartment of Cancer Physiology, Moffitt Cancer Center, Tampa, FL 33612, United States of America.
Andriy MarusykDepartment of Cancer Physiology, Moffitt Cancer Center, Tampa, FL 33612, United States of America.
Sui HuangInstitute for Systems Biology, Seattle, WA 98109, United States of America.
Kishore HariCentre for BioSystems Science and Engineering, Indian Institute of Science, 560012 Bangalore, India.ORCID 0000-0001-5655-9039
Mohit Kumar JollyCentre for BioSystems Science and Engineering, Indian Institute of Science, 560012 Bangalore, India.ORCID 0000-0002-6631-2109
Haralampos HatzikirouMathematics Department, Khalifa University, PO Box 127788, Abu Dhabi, United Arab Emirates.ORCID 0000-0002-1270-7885
Kamrine E PoelsEarly Clinical Development, Pfizer Worldwide Research and Development and Medical, United States of America.ORCID 0000-0002-7220-2213
Mary E SpilkerMedicine Design, Pfizer Worldwide Research and Development and Medical, United States of America.
Blerta ShtyllaEarly Clinical Development, Pfizer Worldwide Research and Development and Medical, United States of America.
Mark Robertson-TessiIntegrated Mathematical Oncology Department, Moffitt Cancer Center and Research Institute, Tampa, FL 33612, United States of America.ORCID 0000-0003-0143-9587
Alexander R A AndersonIntegrated Mathematical Oncology Department, Moffitt Cancer Center and Research Institute, Tampa, FL 33612, United States of America.ORCID 0000-0002-2536-4383

Funding

Information flow and state transitions at the system and multi-dimensional scales in leukemia progressionU01CA250046 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI KUO, YA-HUEI, MARCUCCI, GUIDO · 2020 to 2024
$3.6M
Multiscale systems biology modeling to exploit tumor-stromal metabolic crosstalk in colorectal cancerU01CA232137 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI FINLEY, STACEY DELERIA, MACKLIN, PAUL T · 2018 to 2022
$2.8M
A microengineered colon cancer-chip designed to investigate tumor-stromal interactions driving cancer progressionR01CA241137 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MUMENTHALER, SHANNON MICHELLE · 2021 to 2025
$2.3M
NCI NIH HHS R01 CA241137NCI NIH HHS U01 CA232137NCI NIH HHS U01 CA250046
6 · The paper itself

Abstract

The role of plasticity and epigenetics in shaping cancer evolution and response to therapy has taken center stage with recent technological advances including single cell sequencing. This roadmap article is focused on state-of-the-art mathematical and experimental approaches to interrogate plasticity in cancer, and addresses the following themes and questions: is there a formal overarching framework that encompasses both non-genetic plasticity and mutation-driven somatic evolution? How do we measure and model the role of the microenvironment in influencing/controlling non-genetic plasticity? How can we experimentally study non-genetic plasticity? Which mathematical techniques are required or best suited? What are the clinical and practical applications and implications of these concepts?

Indexed as

Epigenesis, GeneticNeoplasmsEpigenomicsHumansMutationTumor Microenvironmentcancerepigeneticsplasticity

Identifiers

PMID35078159
PMCPMC9190291

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.