Evidence map›Paper›PMID 35076389›Full record

ArticleeLife2022

Structure of the human ATM kinase and mechanism of Nbs1 binding.

Christopher Warren, Nikola P Pavletich

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 53 citations in OpenAlex.

  1. DNA Repair Mechanisms.Methods in molecular biology (Clifton, N.J.) · 2027
    Review
  2. Article
  3. Review
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  11. DNA Damage and Replication Stress Checkpoints.Annual review of biochemistry · 2025
    Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Making PI3K superfamily enzymes run faster.Advances in biological regulation · 2025
    Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Christopher WarrenStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, United States.ORCID 0000-0002-0320-7248
Nikola P PavletichStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, United States.ORCID 0000-0002-6039-3956
Memorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Mechanisms of ATM activation by the MRN complex and DNA Double Strand BreaksF32CA247320 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI WARREN, CHRISTOPHER · 2020 to 2021
$127k
Howard Hughes Medical InstituteNCI NIH HHS F32 CA247320NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

DNA double-strand breaks (DSBs) can lead to mutations, chromosomal rearrangements, genome instability, and cancer. Central to the sensing of DSBs is the ATM (Ataxia-telangiectasia mutated) kinase, which belongs to the phosphatidylinositol 3-kinase-related protein kinase (PIKK) family. In response to DSBs, ATM is activated by the MRN (Mre11-Rad50-Nbs1) protein complex through a poorly understood process that also requires double-stranded DNA. Previous studies indicate that the FxF/Y motif of Nbs1 directly binds to ATM, and is required to retain active ATM at sites of DNA damage. Here, we report the 2.5 Å resolution cryo-EM structures of human ATM and its complex with the Nbs1 FxF/Y motif. In keeping with previous structures of ATM and its yeast homolog Tel1, the dimeric human ATM kinase adopts a symmetric, butterfly-shaped structure. The conformation of the ATM kinase domain is most similar to the inactive states of other PIKKs, suggesting that activation may involve an analogous realigning of the N and C lobes along with relieving the blockage of the substrate-binding site. We also show that the Nbs1 FxF/Y motif binds to a conserved hydrophobic cleft within the Spiral domain of ATM, suggesting an allosteric mechanism of activation. We evaluate the importance of these structural findings with mutagenesis and biochemical assays.

Indexed as

DNA Breaks, Double-StrandedAtaxia Telangiectasia Mutated ProteinsCell Cycle ProteinsHEK293 CellsHumansMutationNuclear ProteinsPhosphatidylinositol 3-KinasePhosphorylationProtein BindingAtaxia Telangiectasia Mutated ProteinsATM protein, humanCell Cycle ProteinsNBN protein, humanNuclear ProteinsPhosphatidylinositol 3-KinaseCryo-EMDNA damage responsehumanmolecular biophysicsprotein kinasestructural biology

Identifiers

PMID35076389
PMCPMC8828054
OpenAlexW4220779403

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.