Evidence map›Paper›PMID 35076190›Full record

ArticleCellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology2022

mOrange2, a Genetically Encoded, pH Sensitive Fluorescent Protein, is an Alternative to BCECF-AM to Measure Intracellular pH to Determine NHE3 and DRA Activity.

Rafiquel Sarker, Chung Ming Tse, Ruxian Lin, George McNamara, Varsha Singh, Mark Donowitz

Open access · goldAbstract read
In one paragraph

Article in Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. pH-regulated nuclear F-actin assembly during ferroptosis.Frontiers in cell and developmental biology · 2025
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Rafiquel SarkerDivision of Gastroenterology, Department of Medicine, The Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Chung Ming TseDivision of Gastroenterology, Department of Medicine, The Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Ruxian LinDivision of Gastroenterology, Department of Medicine, The Johns Hopkins University School of Medicine, Baltimore, MD, USA.
George McNamaraDivision of Gastroenterology, Department of Medicine, The Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Varsha SinghDivision of Gastroenterology, Department of Medicine, The Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Mark DonowitzDivision of Gastroenterology, Department of Medicine, The Johns Hopkins University School of Medicine, Baltimore, MD, USA, mdonowit@jhmi.edu.
Johns Hopkins Medicine · USJohns Hopkins University · US

Funding

Project 3 - Human colonoids as a model for the pathobiology of EHECP01AI125181 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI FOULKE-ABEL, JENNIFER, KAPER, JAMES B · 2016 to 2025
$18.6M
Translational Research Enhancement CoreP30DK089502 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI ZACHOS, NICHOLAS CONSTANTINE · 2011 to 2020
$12.0M
DIARRHEAL DISEASES: A PHYSIOLOGIC APPROACH TO TREATMENTR01DK026523 · NIDDK · TUFTS MEDICAL CENTER · PI DONOWITZ, MARK · 1986 to 2016
$7.8M
PDZ Domain Proteins and NHE3 RegulationR01DK061765 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI DONOWITZ, MARK, TSE, CHUNG-MING · 2004 to 2013
$4.7M
Hopkins Digestive Diseases Research Development CenterR24DK064388 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI DONOWITZ, MARK · 2003 to 2010
$4.6M
Mechanisms and Correction of Abnormal Bicarbonate Secretion by DRA in DiarrheaR01DK116352 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI TSE, CHUNG-MING · 2019 to 2022
$2.2M
Olympus FluoView3000RS Confocal MicroscopeS10OD025244 · OD · JOHNS HOPKINS UNIVERSITY · PI O'ROURKE, BRIAN · 2018 to 2018
$448k
NIAID NIH HHS P01 AI125181NIDDK NIH HHS P30 DK089502NIDDK NIH HHS R01 DK026523NIDDK NIH HHS R01 DK061765NIDDK NIH HHS R01 DK116352NIDDK NIH HHS R24 DK064388NIH HHS S10 OD025244NIH NIAID P01-AI125181NIH NIDDK RO1-DK26523, RO1-DK61765, PO1-DK64388, P30-DK89502NIH SIG 1S10OD025244
6 · The paper itself

Abstract

BACKGROUND/

aimsNHE3 (Na

methodsThe use of a genetically modified fluorescent protein, mOrange2 was explored as an intracellular pH sensor protein to measure exchange activity of NHE3 and DRA. The model used was FRT cells stably expressing NHE3 or DRA with intracellular pH measured by changes of mOrange2 fluorescence intensity. Intracellular pH was monitored using a) Isolated single clones of FRT/mOrange2/HA-NHE3 cells studied in a confocal microscope with time-lapse live cell imaging under basal conditions and when NHE3 was inhibited by exposure to forskolin and stimulated by dexamethasone, b) coverslip grown FRT/mOrange2 cells expressing NHE3 or DRA using a computerized fluorometer with a perfused cuvette with standardization of the mOrange2 absorption and emission signal using K

resultsA similar rate of intracellular alkalization by Na

conclusionThis study demonstrates that mOrange2 protein can be an effective alternate to BCECF-AM in measuring intracellular pH (preferred setting Ex520nm, Em 563nm) as affected by NHE3 and DRA activity, with the advantage, compared to AM ester dyes, that genetic expression can provide uniform expression of the pH sensor.

Indexed as

AnimalsAntiportersFluoresceinsHydrogen-Ion ConcentrationLuminescent ProteinsRatsRats, Inbred F344Sodium-Hydrogen Exchanger 3Sulfate Transporters2',7'-bis(carboxyethyl)-5(6)-carboxyfluoresceinAntiportersFluoresceinsfluorescent protein 583Luminescent ProteinsSlc26a3 protein, ratSlc9a3 protein, ratSodium-Hydrogen Exchanger 3Sulfate TransportersIntracellular pH; mORANGE2; NHE3; DRA

Identifiers

PMID35076190
PMCPMC11283680
OpenAlexW4210477296

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.