Evidence map›Paper›PMID 35075583›Full record

ArticleJournal of applied genetics2022

Genomic study of the resilience of buffalo cows to a negative energy balance.

Francisco Ribeiro de Araujo Neto, Jessica Cristina Gonçalves Dos Santos, Cherlynn Daniela da Silva Arce, Rusbel Raul Ascpilcueta Borquis, Daniel Jordan Abreu Dos Santos, Katia Cylene Guimarães, André Vieira do Nascimento, Henrique Nunes de Oliveira, Humberto Tonhati

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Journal of applied genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Francisco Ribeiro de Araujo NetoInstituto Federal de Educação, Ciência e Tecnologia Goiano - IFGoiano, Rio Verde, Goias, Brazil. francisco.neto@ifgoiano.edu.br.ORCID http://orcid.org/0000-0003-1064-5614
Jessica Cristina Gonçalves Dos SantosDepartament of Animal Science, Universidade Estadual Paulista "Julio de Mesquita" - UNESP, Jaboticabal, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-9230-9245
Cherlynn Daniela da Silva ArceDepartament of Animal Science, Universidade Estadual Paulista "Julio de Mesquita" - UNESP, Jaboticabal, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-9836-064X
Rusbel Raul Ascpilcueta BorquisUniversidade Tecnologica Federal do Paraná - UTFPR, Dois Vizinhos, Paraná, Brazil.ORCID http://orcid.org/0000-0001-9393-3202
Daniel Jordan Abreu Dos SantosAnimal Genetics and Breeding Unit, University of New England, Armidale, NSW, Australia.ORCID http://orcid.org/0000-0002-7062-3372
Katia Cylene GuimarãesInstituto Federal de Educação, Ciência e Tecnologia Goiano - IFGoiano, Rio Verde, Goias, Brazil.ORCID http://orcid.org/0000-0001-8821-9709
André Vieira do NascimentoDepartament of Animal Science, Universidade Estadual Paulista "Julio de Mesquita" - UNESP, Jaboticabal, São Paulo, Brazil.ORCID http://orcid.org/0000-0003-3009-5621
Henrique Nunes de OliveiraDepartament of Animal Science, Universidade Estadual Paulista "Julio de Mesquita" - UNESP, Jaboticabal, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-3181-1223
Humberto TonhatiDepartament of Animal Science, Universidade Estadual Paulista "Julio de Mesquita" - UNESP, Jaboticabal, São Paulo, Brazil.ORCID http://orcid.org/0000-0003-4714-3167
Universidade Estadual Paulista (Unesp) · BRInstituto Federal Goiano · BRUniversidade Tecnológica Federal do Paraná · BRUniversity of New England · AU

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 420202/2016-1Fundação de Amparo à Pesquisa do Estado de São Paulo 2016/21213-0
6 · The paper itself

Abstract

The research article was carried out with the objective of studying the genetic variation on the resilience of buffaloes to negative energy balance-NEB (measured by changes in body weight in early lactation)-as well as investigating genomic regions of interest for this trait. A model of reaction norms was used, considering milk production as the trait to be analyzed and solutions of the contemporary groups to weight changes as environmental gradient. In this methodology, the genetic value of the slope represents the measure of resilience of the animals. After the estimation step, a genome-wide association analysis was performed for the slope of the reaction norms model, to obtain a list of windows and associated genes. The heritability estimates for milk production over the resilience gradient ranged from 0.13 to 0.28, with lower values in the intermediate environmental groups. Regarding the productive resilience of dairy buffalo cows to NEB, the genomic windows with the highest contribution to the genetic variance were detected on chromosomes BBU 1, 2, 3, 4, 9, 12, 19, and 21. A functional analysis of the genes described in the selected windows indicated association with metabolic routes related to growth and immunity of the animals, with an emphasis on the STAT6 gene. The results presented indicate that there is for this trait genetic variation to be used as selection criteria, in addition to genomic regions that can increase the precision of the selection.

Indexed as

BuffaloesGenome-Wide Association StudyAnimalsCattleFemaleGenomicsLactationMilkBubalus bubalisGWASProduction efficiencyssGBLUP

Identifiers

PMID35075583
OpenAlexW4206970399

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.