Evidence map›Paper›PMID 35074895›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Thiol-based chemical probes exhibit antiviral activity against SARS-CoV-2 via allosteric disulfide disruption in the spike glycoprotein.

Yunlong Shi, Ari Zeida, Caitlin E Edwards, Michael L Mallory, Santiago Sastre, Matías R Machado, Raymond J Pickles, Ling Fu, Keke Liu, Jing Yang and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 45 citations in OpenAlex.

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  15. Small molecules in the treatment of COVID-19.Signal transduction and targeted therapy · 2022
    Review
  16. Article
  17. Article
  18. Redox stress in COVID-19: Implications for hematologic disorders.Best practice & research. Clinical haematology · 2022
    Review
  19. Exploring antiviral and anti-inflammatory effects of thiol drugs in COVID-19.American journal of physiology. Lung cellular and molecular physiology · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Yunlong ShiDepartment of Chemistry, Scripps Research, Jupiter, FL 33458.
Ari ZeidaDepartamento de Bioquímica, Facultad de Medicina and Centro de Investigaciones Biomédicas, Universidad de la República, Montevideo 11800, Uruguay.ORCID 0000-0003-0938-287X
Caitlin E EdwardsDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.ORCID 0000-0003-4228-2192
Michael L MalloryDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.
Santiago SastreDepartamento de Bioquímica, Facultad de Medicina and Centro de Investigaciones Biomédicas, Universidad de la República, Montevideo 11800, Uruguay.
Matías R MachadoProtein Engineering Unit, Institut Pasteur de Montevideo, Montevideo 11400, Uruguay.
Raymond J PicklesMarsico Lung Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.
Ling FuState Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences, Beijing Institute of Lifeomics, Beijing 102206, China.
Keke LiuState Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences, Beijing Institute of Lifeomics, Beijing 102206, China.
Jing YangState Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences, Beijing Institute of Lifeomics, Beijing 102206, China.ORCID 0000-0001-8486-273X
Ralph S BaricDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.ORCID 0000-0001-6827-8701
Richard C BoucherMarsico Lung Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599; richard_boucher@med.unc.edu rradi@fmed.edu.uy kcarroll@scripps.edu.
Rafael RadiDepartamento de Bioquímica, Facultad de Medicina and Centro de Investigaciones Biomédicas, Universidad de la República, Montevideo 11800, Uruguay; richard_boucher@med.unc.edu rradi@fmed.edu.uy kcarroll@scripps.edu.
Kate S CarrollDepartment of Chemistry, Scripps Research, Jupiter, FL 33458; richard_boucher@med.unc.edu rradi@fmed.edu.uy kcarroll@scripps.edu.ORCID 0000-0002-7624-9617
University of North Carolina at Chapel Hill · USBeijing Proteome Research Center · CNUniversidad de la República de Uruguay · UYScripps Research Institute · USInstitut Pasteur de Montevideo · UY

Funding

The Biophysics of Mucus Hydration and Adhesion/CohesionP01HL108808 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RUBINSTEIN, MICHAEL · 2012 to 2021
$23.9M
Mechanisms of MERS-CoV Entry, Cross-species Transmission and PathogenesisR01AI110700 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BARIC, RALPH S, LI, FANG · 2015 to 2024
$7.4M
Sulfur Metabolism in Human PathogensR01GM087638 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CARROLL, KATE SUZANNE · 2009 to 2025
$5.0M
Receptor recognition mechanisms of coronavirusesR01AI089728 · NIAID · UNIVERSITY OF MINNESOTA · PI Fang Li, Timothy Patrick Sheahan · 2010 to 2026
$4.7M
Probing the role of cysteine sulfenylation in cell signalingR01GM102187 · NIGMS · UNIVERSITY OF FLORIDA · PI Kate Suzanne Carroll · 2012 to 2026
$4.6M
Redox Modification and Targeting of Mutant KRas in CancerR01CA227849 · NCI · UNIVERSITY OF FLORIDA · PI CARROLL, KATE SUZANNE · 2018 to 2021
$1.7M
Nucleophilic Inhibitors for Targeting Redox-Sensitive KinasesR01CA174864 · NCI · SCRIPPS FLORIDA · PI CARROLL, KATE SUZANNE · 2014 to 2017
$1.6M
NCI NIH HHS R01 CA174864NCI NIH HHS R01 CA227849NHLBI NIH HHS P01 HL108808NIAID NIH HHS R01 AI089728NIAID NIH HHS R01 AI110700NIGMS NIH HHS R01 GM087638NIGMS NIH HHS R01 GM102187
6 · The paper itself

Abstract

The development of small-molecules targeting different components of SARS-CoV-2 is a key strategy to complement antibody-based treatments and vaccination campaigns in managing the COVID-19 pandemic. Here, we show that two thiol-based chemical probes that act as reducing agents, P2119 and P2165, inhibit infection by human coronaviruses, including SARS-CoV-2, and decrease the binding of spike glycoprotein to its receptor, the angiotensin-converting enzyme 2 (ACE2). Proteomics and reactive cysteine profiling link the antiviral activity to the reduction of key disulfides, specifically by disruption of the Cys379-Cys432 and Cys391-Cys525 pairs distal to the receptor binding motif in the receptor binding domain (RBD) of the spike glycoprotein. Computational analyses provide insight into conformation changes that occur when these disulfides break or form, consistent with an allosteric role, and indicate that P2119/P2165 target a conserved hydrophobic binding pocket in the RBD with the benzyl thiol-reducing moiety pointed directly toward Cys432. These collective findings establish the vulnerability of human coronaviruses to thiol-based chemical probes and lay the groundwork for developing compounds of this class, as a strategy to inhibit the SARS-CoV-2 infection by shifting the spike glycoprotein redox scaffold.

Indexed as

Allosteric RegulationAmino AlcoholsAngiotensin-Converting Enzyme 2Antiviral AgentsBinding SitesCell LineCOVID-19COVID-19 Drug TreatmentDisulfidesDose-Response Relationship, DrugHumansMolecular Docking SimulationNasal MucosaOxidation-ReductionPhenyl EthersProtein Binding(2R,3R,4R,5S)-6-(((2S,3R,4R,5R)-2,3,4,5,6-pentahydroxyhexyl)-(2-(4-(sulfanylmethyl)phenoxy)ethyl)amino)hexane-1,2,3,4,5-pentolACE2 protein, humanAmino AlcoholsAngiotensin-Converting Enzyme 2Antiviral AgentsDisulfidesP-2165Phenyl EthersReceptors, VirusRecombinant ProteinsSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2Sulfhydryl Compoundsdisulfide bondsredox biologySARS-CoV-2spike glycoproteinthiol-based chemical probes

Identifiers

PMID35074895
PMCPMC8833197
OpenAlexW4206966312

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.