Evidence map›Paper›PMID 35074827›Full record

ArticleeNeuro

NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments.

Daniel García Murillo, Yixin Zhao, Ora S Rogovin, Kelly Zhang, Andrew W Hu, Mo Re Kim, Shufei Chen, Ziqi Wang, Zoey C Keeley, Daniel I Shin and 5 more

Abstract read
In one paragraph

Article in eNeuro. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Daniel García MurilloDepartment of Biology, Brandeis University, Waltham, MA 02454.
Yixin ZhaoMichtom School of Computer Science, Brandeis University, Waltham, MA 02454.
Ora S RogovinProgram in Neuroscience, Brandeis University, Waltham, MA 02454.
Kelly ZhangDepartment of Biology, Brandeis University, Waltham, MA 02454.
Andrew W HuDepartment of Biology, Brandeis University, Waltham, MA 02454.
Mo Re KimDepartment of Biology, Brandeis University, Waltham, MA 02454.
Shufei ChenProgram in Neuroscience, Brandeis University, Waltham, MA 02454.
Ziqi WangDepartment of Biology, Brandeis University, Waltham, MA 02454.
Zoey C KeeleyProgram in Neuroscience, Brandeis University, Waltham, MA 02454.
Daniel I ShinProgram in Neuroscience, Brandeis University, Waltham, MA 02454.
Victor M Suárez CasanovaProgram in Neuroscience, Brandeis University, Waltham, MA 02454.
Yannan ZhuProgram in Neuroscience, Brandeis University, Waltham, MA 02454.
Lisandro MartinProgram in Neuroscience, Brandeis University, Waltham, MA 02454.
Olga PapaemmanouilVolen Center for Complex Systems, Brandeis University, Waltham, MA 02454.
Stephen D Van HooserDepartment of Biology, Brandeis University, Waltham, MA 02454 vanhooser@brandeis.edu.ORCID 0000-0002-1112-5832

Funding

Undergraduate and Graduate Training in Computational Neuroscience R90DA033463 · NIDA · BRANDEIS UNIVERSITY · PI MILLER, PAUL · 2011 to 2020
$2.0M
Data interface and apps for systems neurophysiology and imagingR24MH114678 · NIMH · BRANDEIS UNIVERSITY · PI VAN HOOSER, STEPHEN D · 2018 to 2019
$761k
NIDA NIH HHS R90 DA033463NIMH NIH HHS R24 MH114678
6 · The paper itself

Abstract

Collaboration in neuroscience is impeded by the difficulty of sharing primary data, results, and software across labs. Here, we introduce Neuroscience Data Interface (NDI), a platform-independent standard that allows an analyst to use and create software that functions independently from the format of the raw data or the manner in which the data are organized into files. The interface is rooted in a simple vocabulary that describes common apparatus and storage devices used in neuroscience experiments. Results of analyses, and analyses of analyses, are stored as documents in a scalable, queryable database that stores the relationships and history among the experiment elements and documents. The interface allows the development of an application ecosystem where applications can focus on calculation rather than data format or organization. This tool can be used by individual labs to exchange and analyze data, and it can serve to curate neuroscience data for searchable archives.

Indexed as

Information Storage and RetrievalNeurosciencesEcosystemSoftwareVocabularyBRAIN initiativebrain sciencedata acquisitiondata archivequeries

Identifiers

PMID35074827
PMCPMC8874953

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.