Evidence map›Paper›PMID 35074019›Full record

ArticleAntimicrobial resistance and infection control2022

Characterizing the bioburden of ESBL-producing organisms in a neonatal unit using chromogenic culture media: a feasible and efficient environmental sampling method.

Moses Vurayai, Jonathan Strysko, Kgomotso Kgomanyane, One Bayani, Margaret Mokomane, Tichaona Machiya, Tonya Arscott-Mills, David M Goldfarb, Andrew P Steenhoff, Carolyn McGann and 4 more

Open access · goldAbstract read
In one paragraph

Article in Antimicrobial resistance and infection control, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Observational
  2. Article
  3. Review
  4. Review
  5. Carbapenem-resistantMicrobiology spectrum · 2026
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  10. Multidrug-resistantHeliyon · 2023
    Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 4 countries.

Moses Vurayai *Department of Medical Laboratory Sciences, Faculty of Health Sciences, University of Botswana, Gaborone, Botswana. mvurayai@gmail.com.
Jonathan Strysko *Department of Paediatric & Adolescent Health, Faculty of Health Sciences, University of Botswana, Gaborone, Botswana.ORCID 0000-0002-5258-7654
Kgomotso KgomanyaneMinistry of Health and Wellness, Gaborone, Botswana.
One BayaniDepartment of Paediatric & Adolescent Health, Faculty of Health Sciences, University of Botswana, Gaborone, Botswana.
Margaret MokomaneDepartment of Medical Laboratory Sciences, Faculty of Health Sciences, University of Botswana, Gaborone, Botswana.
Tichaona MachiyaMinistry of Health and Wellness, Gaborone, Botswana.
Tonya Arscott-MillsDepartment of Paediatric & Adolescent Health, Faculty of Health Sciences, University of Botswana, Gaborone, Botswana.
David M GoldfarbDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada.
Andrew P SteenhoffDepartment of Paediatric & Adolescent Health, Faculty of Health Sciences, University of Botswana, Gaborone, Botswana.
Carolyn McGannGlobal Health Center, Children's Hospital of Philadelphia, Philadelphia, USA.
Britt NakstadDepartment of Paediatric & Adolescent Health, Faculty of Health Sciences, University of Botswana, Gaborone, Botswana.
Alemayehu GezmuDepartment of Paediatric & Adolescent Health, Faculty of Health Sciences, University of Botswana, Gaborone, Botswana.
Melissa Richard-GreenblattPerelman School of Medicine, University of Pennsylvania, Philadelphia, USA.
Susan CoffinGlobal Health Center, Children's Hospital of Philadelphia, Philadelphia, USA.
Children's Hospital of Philadelphia · USUniversity of Botswana · BWMinistry of Health · BWUniversity of British Columbia · CAUniversity of Pennsylvania · US

Funding

Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROBERT GROSS · 1999 to 2026
$78.6M
children's hospital of philadelphia Global Health Pilot GrantNIAID NIH HHS P30 AI045008
6 · The paper itself

Abstract

introductionInfections due to extended spectrum beta-lactamase producing organisms (ESBL) have emerged as the leading cause of sepsis among hospitalized neonates in Botswana and much of sub-Saharan Africa and south Asia. Yet, ESBL reservoirs and transmission dynamics within the neonatal intensive care unit (NICU) environment are not well-understood. This study aimed to assess the efficiency and feasibility of a chromogenic-culture-media-based environmental sampling approach to characterize the ESBL bioburden within a NICU.

methodsA series of four point-prevalence surveys were conducted at a 36-bed NICU at a public tertiary referral hospital in Botswana from January-June 2021. Samples were collected on 4 occasions under semi-sterile technique using 1) flocked swabs & templates (flat surfaces); 2) sterile syringe & tubing (water aspiration); and 3) structured swabbing techniques (hands & equipment). Swabs were transported in physiological saline-containing tubes, vortexed, and 10 µL was inoculated onto chromogenic-agar that was selective and differential for ESBL (CHROMagar™ ESBL, Paris, France), and streaking plates to isolate individual colonies. Bacterial colonies were quantified and phenotypically characterized using biochemical identification tests.

resultsIn total, 567 samples were collected, 248 (44%) of which grew ESBL. Dense and consistent ESBL contamination was detected in and around sinks and certain high-touch surfaces, while transient contamination was demonstrated on medical equipment, caregivers/healthcare worker hands, insects, and feeding stations (including formula powder). Results were available within 24-72 h of collection. To collect, plate, and analyse 50 samples, we estimated a total expenditure of $269.40 USD for materials and 13.5 cumulative work hours among all personnel.

conclusionsUsing basic environmental sampling and laboratory techniques aided by chromogenic culture media, we identified ESBL reservoirs (sinks) and plausible transmission vehicles (medical equipment, infant formula, hands of caregivers/healthcare workers, & insects) in this NICU environment. This strategy was a simple and cost-efficient method to assess ESBL bioburden and may be feasible for use in other settings to support ongoing infection control assessments and outbreak investigations.

Indexed as

Culture MediaIntensive Care Units, NeonatalSampling StudiesBacteriaBacterial Proteinsbeta-LactamasesBotswanaBacterial Proteinsbeta-LactamasesCulture MediaAcinetobacterBioburdenChromogenic culture mediaEnterobacteralesEnvironmental samplingExtended-Spectrum-Beta-LactamaseHand hygieneInfection controlNeonatal sepsisPowdered Infant FormulaPseudomonadales Klebsiella

Identifiers

PMID35074019
PMCPMC8785036
OpenAlexW4207000352

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.