Evidence map›Paper›PMID 35073553›Full record

ArticleNeonatology2022

Urine Proteomics for Noninvasive Monitoring of Biomarkers in Bronchopulmonary Dysplasia.

Saima Ahmed, Oludare A Odumade, Patrick van Zalm, Kinga K Smolen, Kimino Fujimura, Jan Muntel, Melissa S Rotunno, Abigail B Winston, Judith A Steen, Richard B Parad and 3 more

Open access · greenAbstract read
In one paragraph

Article in Neonatology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Saima AhmedDepartment of Pathology, Boston Children's Hospital and Harvard Medical School, Boston, Massachusetts, USA, saima.ahmed@childrens.harvard.edu.
Oludare A OdumadeDepartment of Pediatrics, Precision Vaccines Program, Boston Children's Hospital and Harvard Medical School, Boston, Massachusetts, USA.
Patrick van ZalmDepartment of Pathology, Boston Children's Hospital and Harvard Medical School, Boston, Massachusetts, USA.
Kinga K SmolenDepartment of Pediatrics, Precision Vaccines Program, Boston Children's Hospital and Harvard Medical School, Boston, Massachusetts, USA.
Kimino FujimuraDepartment of Neurobiology, F.M. Kirby Neurobiology Center, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Jan MuntelDepartment of Pathology, Boston Children's Hospital and Harvard Medical School, Boston, Massachusetts, USA.
Melissa S RotunnoDepartment of Pathology, Boston Children's Hospital and Harvard Medical School, Boston, Massachusetts, USA.
Abigail B WinstonDepartment of Pediatric Newborn Medicine, Brigham & Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Judith A SteenDepartment of Neurobiology, F.M. Kirby Neurobiology Center, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Richard B ParadDepartment of Pediatric Newborn Medicine, Brigham & Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Linda J Van MarterDepartment of Pediatric Newborn Medicine, Brigham & Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Stella KourembanasDivision of Newborn Medicine, Department of Pediatrics, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Hanno SteenDepartment of Pathology, Boston Children's Hospital and Harvard Medical School, Boston, Massachusetts, USA.
Boston Children's Hospital · USBrigham and Women's Hospital · US

Funding

HYPOXIC RESPONSES OF VASCULAR SMOOTH MUSCLER01HL055454 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI KOUREMBANAS, STELLA · 1996 to 2018
$6.7M
MSC Exosome Treatment for BPD: Impact on Immunity and Lung DevelopmentR01HL146128 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI Stella Kourembanas · 2019 to 2026
$6.6M
Systems Biology of Bone Marrow Failure and MDS for Precision MedicineRC2DK122533 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI FIGUEROA, MARIA EUGENIA, FLEMING, MARK D · 2019 to 2023
$6.4M
High-throughput proteomics using submicroliter amounts of plasma for comprehensive assessment of the immune statusU24AI152179 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI STEEN, HANNO · 2020 to 2024
$6.3M
Proteogenomics to characterize novel non-coding and extragenic translationR01GM112007 · NIGMS · BOSTON CHILDREN'S HOSPITAL · PI KREIMAN, GABRIEL, STEEN, JUDITH A · 2015 to 2018
$2.4M
Pediatric Pathology Translational ResearchT32HL110852 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI FLEMING, MARK D · 2012 to 2017
$1.4M
Mesenchymal Stem Cell Regulation by Syndecan-1 in Lung InjuryR21AI134025 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI KOUREMBANAS, STELLA, PARK, PYONG WOO · 2018 to 2019
$487k
NHLBI NIH HHS R01 HL055454NHLBI NIH HHS R01 HL146128NHLBI NIH HHS T32 HL110852NIAID NIH HHS R21 AI134025NIAID NIH HHS U24 AI152179NIDDK NIH HHS RC2 DK122533NIGMS NIH HHS R01 GM112007
6 · The paper itself

Abstract

introductionCurrent techniques to diagnose and/or monitor critically ill neonates with bronchopulmonary dysplasia (BPD) require invasive sampling of body fluids, which is suboptimal in these frail neonates. We tested our hypothesis that it is feasible to use noninvasively collected urine samples for proteomics from extremely low gestational age newborns (ELGANs) at risk for BPD to confirm previously identified proteins and biomarkers associated with BPD.

methodsWe developed a robust high-throughput urine proteomics methodology that requires only 50 μL of urine. We utilized the methodology with a proof-of-concept study validating proteins previously identified in invasively collected sample types such as blood and/or tracheal aspirates on urine collected within 72 h of birth from ELGANs (gestational age [26 ± 1.2] weeks) who were admitted to a single Neonatal Intensive Care Unit (NICU), half of whom eventually developed BPD (n = 21), while the other half served as controls (n = 21).

resultsOur high-throughput urine proteomics approach clearly identified several BPD-associated changes in the urine proteome recapitulating expected blood proteome changes, and several urinary proteins predicted BPD risk. Interestingly, 16 of the identified urinary proteins are known targets of drugs approved by the Food and Drug Administration.

conclusionIn addition to validating numerous proteins, previously found in invasively collected blood, tracheal aspirate, and bronchoalveolar lavage, that have been implicated in BPD pathophysiology, urine proteomics also suggested novel potential therapeutic targets. Ease of access to urine could allow for sequential proteomic evaluations for longitudinal monitoring of disease progression and impact of therapeutic intervention in future studies.

Indexed as

Body FluidsBronchopulmonary DysplasiaBiomarkersGestational AgeHumansInfantInfant, NewbornProteomeProteomicsBiomarkersProteomeChronic lung diseaseExtremely low gestational age newbornMass spectrometry

Identifiers

PMID35073553
PMCPMC8940649
OpenAlexW4207078178

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.