Evidence map›Paper›PMID 35073489›Full record

ArticleJournal of the American Chemical Society2022

Direct Measurement of Interhelical DNA Repulsion and Attraction by Quantitative Cross-Linking.

Ian Hamilton, Magdalena Gebala, Daniel Herschlag, Rick Russell

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ian HamiltonDepartment of Molecular Biosciences, University of Texas at Austin, Austin, Texas 78712, United States.ORCID 0000-0002-6217-9013
Magdalena GebalaDepartment of Biochemistry, Stanford University, Stanford California 94305, United States.
Daniel HerschlagDepartment of Biochemistry, Stanford University, Stanford California 94305, United States.ORCID 0000-0002-4685-1973
Rick RussellDepartment of Molecular Biosciences, University of Texas at Austin, Austin, Texas 78712, United States.ORCID 0000-0002-4879-8563

Funding

Mechanisms and Specificity of Proteins that Manipulate DNA and RNA StructureR35GM131777 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI Rick Russell · 2019 to 2026
$3.2M
Fundamental Studies of RNA Conformational ThermodynamicsR01GM132899 · NIGMS · STANFORD UNIVERSITY · PI AL-HASHIMI, HASHIM M, HERSCHLAG, DANIEL · 2019 to 2022
$2.7M
NIGMS NIH HHS R01 GM132899NIGMS NIH HHS R35 GM131777
6 · The paper itself

Abstract

To better understand the forces that mediate nucleic acid compaction in biology, we developed the disulfide cross-linking approach xHEED (X-linking of Helices to measure Electrostatic Effects at Distance) to measure the distance-dependent encounter frequency of two DNA helices in solution. Using xHEED, we determined the distance that the electrostatic potential extends from DNA helices, the dependence of this distance on ionic conditions, and the magnitude of repulsion when two helices approach one another. Across all conditions tested, the potential falls to that of the bulk solution within 15 Å of the major groove surface. For separations of ∼30 Å, we measured a repulsion of 1.8 kcal/mol in low monovalent ion concentration (30 mM Na

Indexed as

CobaltDisulfidesDNAKineticsMagnesiumNucleic Acid ConformationSodiumStatic ElectricityCobaltDisulfidesDNAMagnesiumSodium

Identifiers

PMID35073489
PMCPMC8815069

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.