Evidence map›Paper›PMID 35072210›Full record

ReviewEmerging topics in life sciences2022

Epigenome guided crop improvement: current progress and future opportunities.

Yan Zhang, Haylie Andrews, Judith Eglitis-Sexton, Ian Godwin, Miloš Tanurdžić, Peter A Crisp

Abstract readReview
In one paragraph

Review in Emerging topics in life sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Nitric Oxide Implication in Potato Immunity toInternational journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yan ZhangSchool of Agriculture and Food Sciences, The University of Queensland, Brisbane, Queensland 4072, Australia.
Haylie AndrewsSchool of Agriculture and Food Sciences, The University of Queensland, Brisbane, Queensland 4072, Australia.
Judith Eglitis-SextonSchool of Agriculture and Food Sciences, The University of Queensland, Brisbane, Queensland 4072, Australia.
Ian GodwinQueensland Alliance for Agriculture and Food Innovation, The University of Queensland, Brisbane, Queensland 4072, Australia.
Miloš TanurdžićSchool of Biological Sciences, The University of Queensland, Brisbane, Queensland 4072, Australia.
Peter A CrispSchool of Agriculture and Food Sciences, The University of Queensland, Brisbane, Queensland 4072, Australia.ORCID 0000-0002-3655-0130

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epigenomics encompasses a broad field of study, including the investigation of chromatin states, chromatin modifications and their impact on gene regulation; as well as the phenomena of epigenetic inheritance. The epigenome is a multi-modal layer of information superimposed on DNA sequences, instructing their usage in gene expression. As such, it is an emerging focus of efforts to improve crop performance. Broadly, this might be divided into avenues that leverage chromatin information to better annotate and decode plant genomes, and into complementary strategies that aim to identify and select for heritable epialleles that control crop traits independent of underlying genotype. In this review, we focus on the first approach, which we term 'epigenome guided' improvement. This encompasses the use of chromatin profiles to enhance our understanding of the composition and structure of complex crop genomes. We discuss the current progress and future prospects towards integrating this epigenomic information into crop improvement strategies; in particular for CRISPR/Cas9 gene editing and precision genome engineering. We also highlight some specific opportunities and challenges for grain and horticultural crops.

Indexed as

EpigenomeEpigenomicsChromatinCrops, AgriculturalGene EditingChromatincropsendospermepigeneticsgene expression and regulationmethylation

Identifiers

PMID35072210
PMCPMC9023013

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.