Evidence map›Paper›PMID 35072047›Full record

ArticleKidney medicine2022

Peritoneal Effluent Cell-Free DNA Sequencing in Peritoneal Dialysis Patients With and Without Peritonitis.

Philip Burnham, Fanny Chen, Alexandre P Cheng, Vesh Srivatana, Lisa T Zhang, Emmanuel Edusei, Shady Albakry, Brittany Botticelli, Xunxi Guo, Amanda Renaghan and 9 more

Open access · goldAbstract read
In one paragraph

Article in Kidney medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 1 country.

Philip BurnhamMeinig School of Biomedical Engineering, Cornell University, Ithaca, NY.
Fanny ChenMeinig School of Biomedical Engineering, Cornell University, Ithaca, NY.
Alexandre P ChengMeinig School of Biomedical Engineering, Cornell University, Ithaca, NY.
Vesh SrivatanaRogosin Institute, New York, NY.
Lisa T ZhangDivision of Nephrology and Hypertension, Department of Medicine, Weill Cornell Medicine, New York, NY.
Emmanuel EduseiDivision of Nephrology and Hypertension, Department of Medicine, Weill Cornell Medicine, New York, NY.
Shady AlbakryDivision of Nephrology and Hypertension, Department of Medicine, Weill Cornell Medicine, New York, NY.
Brittany BotticelliDivision of Nephrology and Hypertension, Department of Medicine, Weill Cornell Medicine, New York, NY.
Xunxi GuoDivision of Nephrology and Hypertension, Department of Medicine, Weill Cornell Medicine, New York, NY.
Amanda RenaghanDivision of Nephrology and Hypertension, Department of Medicine, Weill Cornell Medicine, New York, NY.
Jeffrey SilberzweigRogosin Institute, New York, NY.
Darshana M DadhaniaDivision of Nephrology and Hypertension, Department of Medicine, Weill Cornell Medicine, New York, NY.
Joan S LenzMeinig School of Biomedical Engineering, Cornell University, Ithaca, NY.
Michael HeyangMeinig School of Biomedical Engineering, Cornell University, Ithaca, NY.
Iliyan D IlievDivision of Gastroenterology and Hepatology, Department of Medicine, Weill Cornell Medicine, New York, NY.
Joshua A HaydenDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY.
Lars F WestbladeDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY.
Iwijn De VlaminckMeinig School of Biomedical Engineering, Cornell University, Ithaca, NY.
John R LeeDivision of Nephrology and Hypertension, Department of Medicine, Weill Cornell Medicine, New York, NY.
Cornell University · USWeill Cornell Medicine · USThe Rogosin Institute · USNew York Hospital Queens · USNewYork–Presbyterian Hospital · USUniversity of Pennsylvania · US

Funding

Epigenetic Profiling of circulating cell-free DNA for the Monitoring of Graft-Versus-Host Disease after Hematopoietic Cell TransplantationR01AI146165 · NIAID · CORNELL UNIVERSITY · PI DE VLAMINCK, IWIJN, RITZ, JEROME · 2020 to 2024
$3.4M
Metagenomic profiling of urinary cell-free DNA to monitor urinary tract infection after kidney transplantationR01AI151059 · NIAID · CORNELL UNIVERSITY · PI DADHANIA, DARSHANA, DE VLAMINCK, IWIJN · 2020 to 2024
$3.4M
Precision monitoring of kidney transplants via single-cell and single-molecule sequencingDP2AI138242 · NIAID · CORNELL UNIVERSITY · PI DE VLAMINCK, IWIJN · 2017 to 2017
$2.3M
Cell-Free DNA in Peritoneal Fluid as a Novel and Versatile Analyte for Monitoring PeritonitisR21AI164093 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI DE VLAMINCK, IWIJN, LEE, JOHN RICHARD · 2021 to 2022
$481k
Host-Pathogen Interactions From Measurements of Urinary Cell Free DNA in Kidney TransplantationR21AI133331 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI DE VLAMINCK, IWIJN, LEE, JOHN RICHARD · 2017 to 2018
$457k
Mitochondrial Cell-Free DNA as a Marker of Rejection and Damage-Associated Molecular Pattern in Organ TransplantationR21AI124237 · NIAID · CORNELL UNIVERSITY · PI DE VLAMINCK, IWIJN · 2016 to 2017
$427k
NIAID NIH HHS DP2 AI138242NIAID NIH HHS R01 AI146165NIAID NIH HHS R01 AI151059NIAID NIH HHS R21 AI124237NIAID NIH HHS R21 AI133331NIAID NIH HHS R21 AI164093
6 · The paper itself

Abstract

RATIONALE &

objectiveConventional culture can be insensitive for the detection of rare infections and for the detection of common infections in the setting of recent antibiotic usage. Patients receiving peritoneal dialysis (PD) with suspected peritonitis have a significant proportion of negative conventional cultures. This study examines the utility of metagenomic sequencing of peritoneal effluent cell-free DNA (cfDNA) for evaluating the peritoneal effluent in PD patients with and without peritonitis. STUDY

designProspective cohort study. SETTING &

participantsWe prospectively characterized cfDNA in 68 peritoneal effluent samples obtained from 33 patients receiving PD at a single center from September 2016 to July 2018. OUTCOMES: Peritoneal effluent, microbial, and human cfDNA characteristics were evaluated in culture-confirmed peritonitis and culture-negative peritonitis. ANALYTICAL APPROACH: Descriptive statistics were analyzed and microbial cfDNA was detected in culture-confirmed peritonitis and culture-negative peritonitis.

resultsMetagenomic sequencing of cfDNA was able to detect and identify bacterial, viral, and eukaryotic pathogens in the peritoneal effluent from PD patients with culture-confirmed peritonitis, as well as patients with recent antibiotic usage and in cases of culture-negative peritonitis. LIMITATIONS: Parallel cultures were not obtained in all the peritoneal effluent specimens.

conclusionsMetagenomic cfDNA sequencing of the peritoneal effluent can identify pathogens in PD patients with peritonitis, including culture-negative peritonitis.

Indexed as

Cell-free DNAperitoneal dialysisperitonitis

Identifiers

PMID35072047
PMCPMC8767090
OpenAlexW3210386380

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.