ArticleFrontiers in plant science2021
How to Tackle Phylogenetic Discordance in Recent and Rapidly Radiating Groups? Developing a Workflow Using
Article in Frontiers in plant science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Enrichment Probe Sets Combining Universal and Lineage-Specific Targets Help Resolve Recalcitrant Lineages.Molecular ecology resources · 2026Article
- Cryptocaulaceae: a new and deeply diverged branch within the fern tree of life.Journal of plant research · 2026Article
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- Worldwide phylogeny and integrative taxonomy ofPlant diversity · 2026Article
- Historical introgression as a driver of diversification of diploid Picris (Compositae) in the Mediterranean Basin.The Plant journal : for cell and molecular biology · 2025Article
- Do syngameons exist in tropical trees? Challenges to determine their existence and estimate their frequency.Biology letters · 2025Review
- Are We Witnessing a Speciation Continuum? Evidence From Current and Past Gene Flow in the Genus Oritrophium s.s. (Asteraceae) From the Tropical High Andes.Molecular ecology · 2025Article
- A Genome-Wide Analysis of Nuclear Mitochondrial DNA Sequences (NUMTs) in Chrysomelidae Species (Coleoptera).Insects · 2025Article
- Subfamily evolution analysis using nuclear and chloroplast data from the same reads.Scientific reports · 2025Article
- African Mountain Thistles: Three New Genera in thePlants (Basel, Switzerland) · 2023Article
- Pervasive Introgression During Rapid Diversification of the European Mountain Genus Soldanella (L.) (Primulaceae).Systematic biology · 2023Article
- Repeatedly Northwards and Upwards: Southern African Grasslands Fuel the Colonization of the African Sky Islands inPlants (Basel, Switzerland) · 2023Article
- Generic concepts and species diversity within the Gynoxyoid clade (Senecioneae, Compositae).PhytoKeys · 2023Article
- Complete Genomes ofPathogens (Basel, Switzerland) · 2022Article
- The relationship between transposable elements and ecological niches in the Greater Cape Floristic Region: A study on the genusFrontiers in plant science · 2022Article
- Target capture and genome skimming for plant diversity studies.Applications in plant sciencesArticle
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A major challenge in phylogenetics and -genomics is to resolve young rapidly radiating groups. The fast succession of species increases the probability of incomplete lineage sorting (ILS), and different topologies of the gene trees are expected, leading to gene tree discordance, i.e., not all gene trees represent the species tree. Phylogenetic discordance is common in phylogenomic datasets, and apart from ILS, additional sources include hybridization, whole-genome duplication, and methodological artifacts. Despite a high degree of gene tree discordance, species trees are often well supported and the sources of discordance are not further addressed in phylogenomic studies, which can eventually lead to incorrect phylogenetic hypotheses, especially in rapidly radiating groups. We chose the high-Andean Asteraceae genus
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