Evidence map›Paper›PMID 35067084›Full record

ArticleCancer control : journal of the Moffitt Cancer Center

Differential Histone Posttranslational Modifications Induced by DNA Hypomethylating Agents.

Sridhar A Malkaram, Aymen Shatnawi, Jun Fan, Hetty Carraway, James Denvir, Donald A Primerano, Zakaria Y Abd Elmageed, Tamer E Fandy

Open access · goldAbstract read
In one paragraph

Article in Cancer control : journal of the Moffitt Cancer Center. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Sridhar A MalkaramDepartment of Mathematics & Computer Science, 2338West Virginia State University, Institute, WV, USA.
Aymen ShatnawiDepartment of Pharmaceutical & Administrative Sciences, 15657University of Charleston, Charleston, WV, USA.
Jun FanDepartment of Biomedical Sciences, 4034Marshall University, Huntington, WV, USA.
Hetty CarrawayTaussig Cancer Institute, 2569Cleveland Clinic, Cleveland, OH, USA.
James DenvirDepartment of Biomedical Sciences, 4034Marshall University, Huntington, WV, USA.
Donald A PrimeranoDepartment of Biomedical Sciences, 4034Marshall University, Huntington, WV, USA.
Zakaria Y Abd ElmageedDepartment of Biomedical Sciences, Edward Via College of Osteopathic Medicine (VCOM), Monroe, LA, USA.
Tamer E FandyDepartment of Pharmaceutical & Administrative Sciences, 15657University of Charleston, Charleston, WV, USA.
Marshall University · USUniversity of Charleston · USCleveland Clinic · USEdward Via College of Osteopathic Medicine · USWest Virginia State University · US

Funding

WV INBRE: The Inhibitor of Growth Family Member 4 (ING4) inhibits L-Type Amino Acid Transporter 1 (LAT1) expression to suppress Breast CancerP20GM103434 · NIGMS · MARSHALL UNIVERSITY · PI GARY O RANKIN · 2012 to 2026
$61.1M
NIGMS NIH HHS P20 GM103434
6 · The paper itself

Abstract

introductionThe prototype DNA hypomethylating agents 5-azacytidine (5AC) and decitabine (DAC) are currently FDA-approved for treatment of blood and bone marrow disorders like myelodysplastic syndrome. 5AC and DAC are considered similar drugs and were shown to induce histone modifications that modulate gene expression. The aim of this study is to compare the effect of both drugs on histone acetylation and methylation at multiple histone amino acids residues.

methodsMass spectrometry was used to compare the effect of both drugs on 95 different histone posttranslational modifications (PTMs) in leukemia cells. ChIP-Seq analysis was used to compare the impact of both drugs on the genome-wide acetylation of the H3K9 mark using primary leukemia cells from six de-identified AML patients.

resultsBoth DAC and 5AC induced histone PTMs in different histone isoforms like H1.4, H2A, H3, H3.1, and H4. Changes in both histone methylation and acetylation were observed with both drugs; however, there were distinct differences in the histone modifications induced by the two drugs. Since both drugs were shown to increase the activity of the HDAC SIRT6 previously, we tested the effect of 5AC on the acetylation of H3K9, the physiological substrate SIRT6, using ChIP-Seq analysis and compared it to the previously published DAC-induced changes. Significant H3K9 acetylation changes (

conclusionDespite similarity in chemical structure and DNA hypomethylating activity, 5AC and DAC induced widely different histone PTMs and considering them interchangeable should be carefully evaluated. The mechanism of these histone PTM changes is not clear and may involve modulation of the activity or the expression of the enzymes inducing histone PTMs.

Indexed as

AcetylationAzacitidineCell Line, TumorDecitabineDNA MethylationHistonesHumansLeukemiaProtein Processing, Post-TranslationalAzacitidineDecitabineHistones5-azacytidinedecitabineDNA methylationH3K9 acetylationleukemia

Identifiers

PMID35067084
PMCPMC8796079
OpenAlexW4207039613

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.