Evidence map›Paper›PMID 35065915›Full record

ArticleBiophysical journal2022

Sequence coevolution and structure stabilization modulate olfactory receptor expression.

Soumadwip Ghosh, Claire A de March, Sergio Branciamore, Sahar Kaleem, Hiroaki Matsunami, Nagarajan Vaidehi

Open access · greenAbstract read
In one paragraph

Article in Biophysical journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Soumadwip GhoshDepartment of Computational and Quantitative Medicine, Beckman Research Institute of the City of Hope, Duarte, CA, USA.
Claire A de MarchDepartment of Molecular Genetics and Microbiology, Duke University School of Medicine, Durham, NC, USA.
Sergio BranciamoreDepartment of Computational and Quantitative Medicine, Beckman Research Institute of the City of Hope, Duarte, CA, USA.
Sahar KaleemDepartment of Molecular Genetics and Microbiology, Duke University School of Medicine, Durham, NC, USA.
Hiroaki MatsunamiDepartment of Molecular Genetics and Microbiology, Duke University School of Medicine, Durham, NC, USA; Department of Neurobiology, Duke Institute for Brain Sciences, Duke University School of Medicine, Durham, NC, USA. Electronic address: hiroaki.matsunami@duke.edu.
Nagarajan VaidehiDepartment of Computational and Quantitative Medicine, Beckman Research Institute of the City of Hope, Duarte, CA, USA. Electronic address: nvaidehi@coh.org.
Duke University · USCity of Hope · USCity Of Hope National Medical Center · US

Funding

Peripheral Odor Coding in MammalsR01DC014423 · NIDCD · DUKE UNIVERSITY · PI MATSUNAMI, HIROAKI · 2015 to 2019
$2.3M
Computationally Guided Design of Thermostable mutants of Neurotensin receptor1R01GM097261 · NIGMS · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI VAIDEHI, NAGARAJAN · 2011 to 2018
$2.3M
Biogenesis of olfactory G protein-coupled receptorsR01DC016224 · NIDCD · DUKE UNIVERSITY · PI MATSUNAMI, HIROAKI · 2017 to 2021
$2.2M
Understanding of G protein-coupled odorant receptors functionK99DC018333 · NIDCD · DUKE UNIVERSITY · PI DE MARCH, CLAIRE A. · 2020 to 2021
$172k
NIDCD NIH HHS K99 DC018333NIDCD NIH HHS R01 DC014423NIDCD NIH HHS R01 DC016224NIGMS NIH HHS R01 GM097261
6 · The paper itself

Abstract

Olfactory receptors (ORs) belong to class A G-protein coupled receptors (GPCRs) and are activated by a variety of odorants. To date, there is no three-dimensional structure of an OR available. One of the major bottlenecks in obtaining purified protein for structural studies of ORs is their poor expression in heterologous cells. To design mutants that enhance expression and thereby enable protein purification, we first identified computable physical properties that recapitulate OR and class A GPCR expression and further conducted an iterative computational prediction-experimental test cycle and generated human OR mutants that express as high as biogenic amine receptors for which structures have been solved. In the process of developing the computational method to recapitulate the expression of ORs in membranes, we identified properties, such as amino acid sequence coevolution, and the strength of the interactions between intracellular loop 1 (ICL1) and the helix 8 region of ORs, to enhance their heterologous expression. We identified mutations that are directly located in these regions as well as other mutations not located in these regions but allosterically strengthen the ICL1-helix 8 enhance expression. These mutants also showed functional responses to known odorants. This method to enhance heterologous expression of mammalian ORs will facilitate high-throughput "deorphanization" of ORs, and enable OR purification for biochemical and structural studies to understand odorant-OR interactions.

Indexed as

Receptors, OdorantAmino Acid SequenceAnimalsHumansMammalsOdorantsReceptors, G-Protein-CoupledReceptors, G-Protein-CoupledReceptors, Odorant

Identifiers

PMID35065915
PMCPMC8947990
OpenAlexW4206404165

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.