Evidence map›Paper›PMID 35065578›Full record

ArticleThe Journal of chemical physics2022

Molecular mechanisms of cardiac actomyosin transforming from rigor state to post-rigor state.

Shengjie Sun, Chitra Karki, Bruce Z Gao, Lin Li

Open access · greenAbstract read
In one paragraph

Article in The Journal of chemical physics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. HIT web server: A hybrid method to improve electrostatic calculations for biomolecules.Computational and structural biotechnology journal · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Shengjie SunComputational Science Program, The University of Texas at El Paso, 500 W University Ave., El Paso, Texas 79968, USA.
Chitra KarkiComputational Science Program, The University of Texas at El Paso, 500 W University Ave., El Paso, Texas 79968, USA.
Bruce Z GaoDepartment of Bioengineering, Clemson University, Clemson, South Carolina 29634, USA.
Lin LiComputational Science Program, The University of Texas at El Paso, 500 W University Ave., El Paso, Texas 79968, USA.ORCID s0000000164472398
The University of Texas at El Paso · USClemson University · US

Funding

UTEP Border Biomedical Research CenterU54MD007592 · NIMHD · UNIVERSITY OF TEXAS EL PASO · PI Gabriel Andrew Frietze · 2019 to 2026
$35.1M
Developing and applying large-scale simulation approach to understand the mechanisms of kinesins' motilities along microtubulesSC1GM132043 · NIGMS · UNIVERSITY OF TEXAS EL PASO · PI LI, LIN · 2019 to 2022
$1.5M
NIGMS NIH HHS SC1 GM132043NIMHD NIH HHS U54 MD007592
6 · The paper itself

Abstract

Sudden cardiac death contributed to half of all deaths from cardiovascular diseases. The mechanism of the kinetic cycle of cardiac myosin is crucial for heart protection and drug development. The state change in the myosin kinetic cycle from the rigor state to the post-rigor state is fundamental to explain binding and dissociation. Here, we used β-cardiac myosin in the rigor and post-rigor states to model the actomyosin complexes. Molecular dynamics simulations, electrostatic analysis, and energetic analysis of actomyosin complexes were performed in this work. The results showed that there are fewer interactions and lower electrostatic binding strength in the post-rigor state than in the rigor state. In the post-rigor state, there were higher free binding energy, fewer salt bridges, and fewer hydrogen bonds. The results showed a lower binding affinity in the post-rigor state than in the rigor state. The decrease in the binding affinity provided important conditions for dissociation of the myosin from the actin filament. Although previous studies focused mostly on the binding process, this study provides evidence of dissociation, which is even more important in the myosin kinetic cycle. This research on the mechanism of myosin kinetic cycles provides a novel direction for future genetic disease studies.

Indexed as

ActomyosinCardiac MyosinsActin CytoskeletonAdenosine TriphosphateModels, ChemicalMolecular Dynamics SimulationStatic ElectricityActomyosinAdenosine TriphosphateCardiac Myosins

Identifiers

PMID35065578
PMCPMC9305598
OpenAlexW4200053378

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.