Evidence map›Paper›PMID 35065253›Full record

ArticleMicrobial pathogenesis2022

Genomic characterization unravelling the causative role of SARS-CoV-2 Delta variant of lineage B.1.617.2 in 2nd wave of COVID-19 pandemic in Chhattisgarh, India.

Pushpendra Singh, Kuldeep Sharma, Priyanka Singh, Anudita Bhargava, Sanjay Singh Negi, Pratibha Sharma, Mayuri Bhise, Manish Kumar Tripathi, Atul Jindal, Nitin M Nagarkar

Open access · greenAbstract read
In one paragraph

Article in Microbial pathogenesis, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Pushpendra SinghDepartment of Microbiology, All India Institute of Medical Sciences (AIIMS), Raipur, Chhattisgarh, India.
Kuldeep SharmaDepartment of Microbiology, All India Institute of Medical Sciences (AIIMS), Raipur, Chhattisgarh, India.
Priyanka SinghDepartment of Microbiology, All India Institute of Medical Sciences (AIIMS), Raipur, Chhattisgarh, India.
Anudita BhargavaDepartment of Microbiology, All India Institute of Medical Sciences (AIIMS), Raipur, Chhattisgarh, India.
Sanjay Singh NegiDepartment of Microbiology, All India Institute of Medical Sciences (AIIMS), Raipur, Chhattisgarh, India. Electronic address: negidr@aiimsraipur.edu.in.
Pratibha SharmaDepartment of Microbiology, All India Institute of Medical Sciences (AIIMS), Raipur, Chhattisgarh, India.
Mayuri BhiseDepartment of Microbiology, All India Institute of Medical Sciences (AIIMS), Raipur, Chhattisgarh, India.
Manish Kumar TripathiDepartment of Biophysics, All India Institute of Medical Sciences (AIIMS), New Delhi, India.
Atul JindalCOVID Treatment Centre Incharge, All India Institute of Medical Sciences (AIIMS), Raipur, Chhattisgarh, India.
Nitin M NagarkarAll India Institute of Medical Sciences (AIIMS), Raipur, Chhattisgarh, India.
All India Institute of Medical Sciences Raipur · INAll India Institute of Medical Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

COVID-19 pandemic 2nd wave catastrophic effect in the state of Chhattisgarh, India, from where no exclusive genomic data yet published, has prompted us to undertake this study to unearth the causative variant. Whole-genome sequencing of SARS-CoV-2 isolated from COVID-19 infected nine vaccinated healthcare workers (HCW), thirty mild/moderate, seventeen severe, and twenty-seven deceased patients, was performed. The significant predominance of the SARS-CoV-2 variant of concern (VOC), Delta (lineage B.1.617.2) identified in sixty-four (77.1%) cases in contrast to B.1 and its sublineage in eleven (13.2%), variant under monitoring (VUM), Kappa (lineage B.1.617.1) in five (6.0%) and another VOC Alpha (lineage B.1.1.7) in three (3.6%) cases respectively (p < 0.05, χ

Indexed as

COVID-19SARS-CoV-2GenomicsHumansMutationPandemicsSpike Glycoprotein, CoronavirusSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2ChhattisgarhCOVID-19Delta variantSARS-CoV-2Second wave

Identifiers

PMID35065253
PMCPMC8769534
OpenAlexW4205526959

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.