Evidence map›Paper›PMID 35064421›Full record

ArticlePlant molecular biology2022

A premature stop codon in BrFLC2 transcript results in early flowering in oilseed-type Brassica rapa plants.

Sujeong Kim, Jin A Kim, Hajeong Kang, Dong-Hwan Kim

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Article in Plant molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Sujeong Kim *Department of Plant Science and Technology, Chung-Ang University, Anseong, South Korea.
Jin A Kim *Department of Agricultural Biotechnology, National Academy of Agricultural Science, Rural Development Administration, Jeonju, South Korea.
Hajeong KangDepartment of Plant Science and Technology, Chung-Ang University, Anseong, South Korea.
Dong-Hwan KimDepartment of Plant Science and Technology, Chung-Ang University, Anseong, South Korea. dhkim92@cau.ac.kr.ORCID http://orcid.org/0000-0003-3348-4948
Chung-Ang University · KRRural Development Administration · KR

Funding

national academy of agricultural science PJ01566201national research foundation of korea 2021R1F1A1047822
6 · The paper itself

Abstract

key messageNonsense-mediated mRNA decay (NMD)-mediated degradation of BrFLC2 transcripts is the main cause of rapid flowering of oilseed-type B. rapa 'LP08' plants. Many Brassica species require vernalization (long-term winter-like cooling) for transition to the reproductive stage. In the past several decades, scientific efforts have been made to discern the molecular mechanisms underlying vernalization in many species. Thus, to identify the key regulators required for vernalization in Brassica rapa L., we constructed a linkage map composed of 7833 single nucleotide polymorphism markers using the late-flowering Chinese cabbage (B. rapa L. ssp. pekinensis) inbred line 'Chiifu' and the early-flowering yellow sarson (B. rapa L. ssp. trilocularis) line 'LP08' and identified a single major QTL on the upper-arm of the chromosome A02. In addition, we compared the transcriptomes of the lines 'Chiifu' and 'LP08' at five vernalization time points, including both non-vernalized and post-vernalization conditions. We observed that BrFLC2 was significantly downregulated in the early flowering 'LP08' and had two deletion sites (one at 4th exon and the other at 3' downstream region) around the BrFLC2 genomic region compared with the BrFLC2 genomic region in 'Chiifu'. Large deletion at 3' downstream region did not significantly affect transcription of both sense BrFLC2 transcript and antisense transcript, BrFLC2as along vernalization time course. However, the other deletion at 4th exon of BrFLC2 resulted in the generation of premature stop codon in BrFLC2 transcript in LP08 line. Cycloheximide treatment of LP08 line showed the de-repressed level of BrFLC2 in LP08, suggesting that low transcript level of BrFLC2 in LP08 might be caused by nonsense-mediated mRNA decay removing the nonsense transcript of BrFLC2. Collectively, this study provides a better understanding of the molecular mechanisms underlying floral transition in B. rapa.

Indexed as

Base SequenceBrassica rapaCodon, TerminatorDNA, PlantFlowersGene Expression Regulation, PlantGenome, PlantMutationPlant ProteinsQuantitative Trait LociCodon, TerminatorDNA, PlantPlant ProteinsBrassica rapa L.Flowering timeNonsense-mediated mRNA decay (NMD)QTL mappingTranscriptome analysisVernalization

Identifiers

PMID35064421
OpenAlexW4207065441

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.