Evidence map›Paper›PMID 35064114›Full record

ArticleNature communications2022

The combined DNA and RNA synthetic capabilities of archaeal DNA primase facilitate primer hand-off to the replicative DNA polymerase.

Mark D Greci, Joseph D Dooher, Stephen D Bell

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Frontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Mark D GreciDepartment of Biology, Indiana University, Simon Hall MSB, 212S Hawthorne Drive, Bloomington, IN, 47405, USA.ORCID 0000-0001-6506-0790
Joseph D DooherIndependent Scholar, Indiana University, Simon Hall MSB, 212S Hawthorne Drive, Bloomington, IN, 47405, USA.
Stephen D BellDepartment of Biology, Indiana University, Simon Hall MSB, 212S Hawthorne Drive, Bloomington, IN, 47405, USA. stedbell@indiana.edu.ORCID 0000-0002-8474-6592
Indiana University Bloomington · US

Funding

Initiation of DNA ReplicationR01GM125579 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BELL, STEPHEN DAVID · 2018 to 2021
$1.2M
NIGMS NIH HHS R01 GM125579
6 · The paper itself

Abstract

Replicative DNA polymerases cannot initiate DNA synthesis de novo and rely on dedicated RNA polymerases, primases, to generate a short primer. This primer is then extended by the DNA polymerase. In diverse archaeal species, the primase has long been known to have the ability to synthesize both RNA and DNA. However, the relevance of these dual nucleic acid synthetic modes for productive primer synthesis has remained enigmatic. In the current work, we reveal that the ability of primase to polymerize DNA serves dual roles in promoting the hand-off of the primer to the replicative DNA polymerase holoenzyme. First, it creates a 5'-RNA-DNA-3' hybrid primer which serves as an optimal substrate for elongation by the replicative DNA polymerase. Second, it promotes primer release by primase. Furthermore, modeling and experimental data indicate that primase incorporates a deoxyribonucleotide stochastically during elongation and that this switches the primase into a dedicated DNA synthetic mode polymerase.

Indexed as

DNA ReplicationDNA, ArchaealDNA-Directed DNA PolymeraseDNA PrimaseDNA PrimersFluorescence PolarizationKineticsModels, BiologicalNucleotidesPolymerizationRNA, ArchaealStochastic ProcessesDNA, ArchaealDNA-Directed DNA PolymeraseDNA PrimaseDNA PrimersNucleotidesRNA, Archaeal

Identifiers

PMID35064114
PMCPMC8782868
OpenAlexW4205552210

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.