Evidence map›Paper›PMID 35064043›Full record

ArticleRNA (New York, N.Y.)2022

The PIWI/piRNA response is relaxed in a rodent that lacks mobilizing transposable elements.

Michael W Vandewege, Roy N Patt, Dana K Merriman, David A Ray, Federico G Hoffmann

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Enigmatic Pachytene PIWI-Interacting RNAs.Genome biology and evolution · 2024
    Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 1 country.

Michael W VandewegeDepartment of Biology, Eastern New Mexico University, Portales, New Mexico 88130, USA.ORCID 0000-0003-1115-9087
Roy N PattDisease Intervention and Prevention Program, Texas Biomedical Research Institute, San Antonio, Texas 78245-0549, USA.
Dana K MerrimanDepartment of Biology, University of Wisconsin Oshkosh, Oshkosh, Wisconsin 54901, USA.
David A RayDepartment of Biological Sciences, Texas Tech University, Lubbock, Texas 79409, USA.
Federico G HoffmannDepartment of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, Mississippi 39762, USA.ORCID 0000-0001-5056-4929
Eastern New Mexico University · USMississippi State University · USTexas Biomedical Research Institute · USTexas Tech University · USUniversity of Wisconsin–Oshkosh · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposable elements (TEs) are genomic parasites that can propagate throughout host genomes. Mammalian genomes are typically dominated by LINE retrotransposons and their associated SINEs, and germline mobilization is a challenge to genome integrity. There are defenses against TE proliferation and the PIWI/piRNA defense is among the most well understood. However, the PIWI/piRNA system has been investigated largely in animals with actively mobilizing TEs and it is unclear how the PIWI/piRNA system functions in the absence of mobilizing TEs. The 13-lined ground squirrel provides the opportunity to examine PIWI/piRNA and TE dynamics within the context of minimal, and possibly nonexistent, TE accumulation. To do so, we compared the PIWI/piRNA dynamics in squirrels to observations from the rabbit and mouse. Despite a lack of young insertions in squirrels, TEs were still actively transcribed at higher levels compared to mouse and rabbit. All three

Indexed as

DNA Transposable ElementsRodentiaAnimalsGerm CellsHumansMaleMiceRabbitsRNA, Small InterferingTestisDNA Transposable ElementsRNA, Small InterferingArgonautesnonmodel mammalsping-pong cycleretrotransposonsRNAi

Identifiers

PMID35064043
PMCPMC8925971
OpenAlexW4221011377

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.