Evidence map›Paper›PMID 35064017›Full record

ArticleCancer research2022

Association of Genetic Ancestry and Molecular Signatures with Cancer Survival Disparities: A Pan-Cancer Analysis.

Kara Keun Lee, Lavanya Rishishwar, Dongjo Ban, Shashwat Deepali Nagar, Leonardo Mariño-Ramírez, John F McDonald, I King Jordan

Abstract read
In one paragraph

Article in Cancer research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. An Analytic Pipeline to Obtain Reliable Genetic Ancestry Estimates from Tumor-Derived RNA Sequencing Data.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. The prognosis and treatment of newly diagnosed bone metastasis of head and neck squamous cell cancer: an analysis of racial disparity.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
    Article
  15. Article
  16. Article
  17. Research Silos in Cancer Disparities: Obstacles to Improving Clinical Outcomes for Underserved Patient Populations.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Article
  18. Area-level Socioeconomic Disadvantage and Cancer Survival in Metropolitan Detroit.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kara Keun LeeIntegrated Cancer Research Center, School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia.
Lavanya RishishwarSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia.ORCID 0000-0002-2055-9392
Dongjo BanIntegrated Cancer Research Center, School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia.
Shashwat Deepali NagarSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia.
Leonardo Mariño-RamírezNational Institute on Minority Health and Health Disparities, National Institutes of Health, Bethesda, Maryland.ORCID 0000-0002-5716-8512
John F McDonaldIntegrated Cancer Research Center, School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia.ORCID 0000-0002-4263-8155
I King JordanIntegrated Cancer Research Center, School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia.

Funding

Genomics and Biobank Research for Health EquityZIAMD000018 · NIMHD · NATIONAL INSTITUTE ON MINORITY HEALTH AND HEALTH DISPARITIES · PI MARIÑO-RAMÍREZ, LEONARDO · 2020 to 2025
$2.7M
Epidemiology and Genomics of Health DisparitiesZIAMD000016 · NIMHD · NATIONAL INSTITUTE ON MINORITY HEALTH AND HEALTH DISPARITIES · PI MARINO-RAMIREZ, LEONARDO · 2019 to 2021
$1.6M
Intramural NIH HHS Z99 MD999999Intramural NIH HHS ZIA MD000016Intramural NIH HHS ZIA MD000018
6 · The paper itself

Abstract

While overall cancer mortality has steadily decreased in recent decades, cancer health disparities among racial and ethnic population groups persist. Here we studied the relationship between cancer survival disparities (CSD), genetic ancestry (GA), and tumor molecular signatures across 33 cancers in a cohort of 9,818 patients. GA correlated with race and ethnicity but showed observable differences in effects on CSD, with significant associations identified in four cancer types: breast invasive carcinoma (BRCA), head and neck squamous cell carcinoma (HNSCC), kidney renal clear cell carcinoma (KIRC), and skin cutaneous carcinoma (SKCM). Differential gene expression and methylation between ancestry groups associated cancer-related genes with CSD, of which, seven protein-coding genes [progestin and adipoQ receptor family member 6 (PAQR6), Lck-interacting transmembrane adaptor 1 (LIME1), Sin3A-associated protein 25 (SAP25), MAX dimerization protein 3 (MXD3), coiled-coil glutamate rich protein 2 (CCER2), refilin A (RFLNA), and cathepsin W (CTSW)] significantly interacted with GA and exacerbated observed survival disparities. These findings indicated that regulatory changes mediated by epigenetic mechanisms have a greater contribution to CSD than population-specific mutations. Overall, we uncovered various molecular mechanisms through which GA might impact CSD, revealing potential population-specific therapeutic targets for groups disproportionately burdened by cancer. SIGNIFICANCE: This large-cohort, multicancer study identifies four cancer types with cancer survival disparities and seven cancer-related genes that interact with genetic ancestry and contribute to disparities.

Indexed as

Carcinoma, Renal CellHead and Neck NeoplasmsKidney NeoplasmsGene Expression Regulation, NeoplasticHumansOncogenesSurvival Analysis

Identifiers

PMID35064017
PMCPMC8983592

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.