Evidence map›Paper›PMID 35063072›Full record

ArticleCell2022

Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma.

Tyler Risom, David R Glass, Inna Averbukh, Candace C Liu, Alex Baranski, Adam Kagel, Erin F McCaffrey, Noah F Greenwald, Belén Rivero-Gutiérrez, Siri H Strand and 16 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 228 papers.

0numbers the graph read from it
0cells of the map it votes in
228citing papers in PubMed
36.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

228 citing papers in PubMed, 364 citations in OpenAlex.

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168 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 5 institutions in 1 country.

Tyler RisomDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA; Department of Research Pathology, Genentech, South San Francisco, CA, USA.
David R GlassDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Inna AverbukhDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Candace C LiuDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Alex BaranskiDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Adam KagelDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Erin F McCaffreyDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Noah F GreenwaldDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Belén Rivero-GutiérrezDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Siri H StrandDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Sushama VarmaDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Alex KongDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Leeat KerenDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Sucheta SrivastavaDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Chunfang ZhuDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Zumana KhairDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Deborah J VeisDepartments of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Katherine DeschryverDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Sujay VennamDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Carlo MaleyBiodesign institute, Arizona State University, Tempe, AZ, USA.
E Shelley HwangDepartment of Surgery, Duke University, Durham, NC, USA.
Jeffrey R MarksDepartment of Surgery, Duke University, Durham, NC, USA.
Sean C BendallDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Graham A ColditzDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Robert B WestDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA. Electronic address: rbwest@stanford.edu.
Michael AngeloDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA; Departments of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO, USA. Electronic address: mangelo0@stanford.edu.
Stanford University · USWashington University in St. Louis · USDuke University · USArizona State University · USStanford Medicine · US

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI JOHN N. NORTON · 1985 to 2026
$174.8M
Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI AIMEE S JAMES · 2001 to 2026
$128.0M
MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
Stanford Cancer Immune Monitoring and Analysis Center (CIMAC)U24CA224309 · NCI · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Holden T. Maecker · 2017 to 2026
$19.9M
Molecular, Cellular and Tissue Characterization UnitU2CCA233254 · NCI · DUKE UNIVERSITY · PI HWANG, E.SHELLEY · 2018 to 2023
$11.4M
MIRIAD - Multiplexed Imaging of Resilience In Alzheimers DiseaseR01AG057915 · NIA · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL, BENDALL, SEAN CURTIS · 2017 to 2021
$4.5M
Genomic and Morphologic Predictor of High-Risk DCISR01CA193694 · NCI · STANFORD UNIVERSITY · PI WEST, ROBERT B · 2016 to 2020
$3.5M
The Phenotypic Landscape of Cognitive Decline as Revealed by Next-Generation Multiplexed Ion Beam ImagingR01AG056287 · NIA · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL, BENDALL, SEAN CURTIS · 2017 to 2021
$2.6M
Predictive signatures in breast cancer using multiplexed ion beam imagingDP5OD019822 · OD · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL · 2014 to 2018
$2.0M
(PQC3) Genomic Diversity and Microenvironment as Drivers of Metastasis in DCISR01CA185138 · NCI · DUKE UNIVERSITY · PI HWANG, E.SHELLEY, MALEY, CARLO · 2014 to 2017
$2.0M
A robust platform for multiplexed, subcellular proteomic imaging in human tissueUH3CA246633 · NCI · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL, BENDALL, SEAN CURTIS · 2019 to 2021
$1.8M
NCI NIH HHS P30 CA014236NCI NIH HHS P30 CA091842NCI NIH HHS R01 CA185138NCI NIH HHS R01 CA193694NCI NIH HHS U24 CA224309NCI NIH HHS U2C CA233254NCI NIH HHS UH3 CA246633NIAID NIH HHS T32 AI007290NIA NIH HHS R01 AG056287NIA NIH HHS R01 AG057915NIH HHS DP5 OD019822
6 · The paper itself

Abstract

Ductal carcinoma in situ (DCIS) is a pre-invasive lesion that is thought to be a precursor to invasive breast cancer (IBC). To understand the changes in the tumor microenvironment (TME) accompanying transition to IBC, we used multiplexed ion beam imaging by time of flight (MIBI-TOF) and a 37-plex antibody staining panel to interrogate 79 clinically annotated surgical resections using machine learning tools for cell segmentation, pixel-based clustering, and object morphometrics. Comparison of normal breast with patient-matched DCIS and IBC revealed coordinated transitions between four TME states that were delineated based on the location and function of myoepithelium, fibroblasts, and immune cells. Surprisingly, myoepithelial disruption was more advanced in DCIS patients that did not develop IBC, suggesting this process could be protective against recurrence. Taken together, this HTAN Breast PreCancer Atlas study offers insight into drivers of IBC relapse and emphasizes the importance of the TME in regulating these processes.

Indexed as

Breast NeoplasmsCarcinoma, Intraductal, NoninfiltratingCell DifferentiationCohort StudiesDisease ProgressionEpithelial CellsEpitheliumExtracellular MatrixFemaleFibroblastsHumansMiddle AgedNeoplasm InvasivenessNeoplasm Recurrence, LocalPhenotypeSingle-Cell Analysisbreast cancerDCISMIBImyoepitheliumspatial proteomicssystems biologytumor microenvironmenttumor progression

Identifiers

PMID35063072
PMCPMC8792442
OpenAlexW4226057452

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.