Evidence map›Paper›PMID 35062303›Full record

ArticleViruses2022

Co-Circulation of Chikungunya and Multiple DENV Serotypes and Genotypes, Western Indonesia 2015-2016.

Harapan Harapan, Alice Michie, Timo Ernst, Kritu Panta, Mudatsir Mudatsir, Benediktus Yohan, Sotianingsih Haryanto, Suzi McCarthy, R Tedjo Sasmono, Allison Imrie

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. The evolution of chikungunya virus circulating in Indonesia: Sequence analysis of the orf2 gene encoding the viral structural proteins.International microbiology : the official journal of the Spanish Society for Microbiology · 2023
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Harapan HarapanMedical Research Unit, School of Medicine, Universitas Syiah Kuala, Banda Aceh 23111, Indonesia.ORCID 0000-0001-7630-8413
Alice MichieSchool of Biomedical Sciences, University of Western Australia, Nedlands, WA 6009, Australia.
Timo ErnstSchool of Biomedical Sciences, University of Western Australia, Nedlands, WA 6009, Australia.
Kritu PantaSchool of Biomedical Sciences, University of Western Australia, Nedlands, WA 6009, Australia.
Mudatsir MudatsirMedical Research Unit, School of Medicine, Universitas Syiah Kuala, Banda Aceh 23111, Indonesia.ORCID 0000-0002-5643-9384
Benediktus YohanEijkman Institute for Molecular Biology, Jakarta 10430, Indonesia.ORCID 0000-0003-2378-2386
Sotianingsih HaryantoFaculty of Medicine and Health Science, Universitas Jambi, Jambi 36361, Indonesia.
Suzi McCarthySchool of Biomedical Sciences, University of Western Australia, Nedlands, WA 6009, Australia.
R Tedjo SasmonoEijkman Institute for Molecular Biology, Jakarta 10430, Indonesia.ORCID 0000-0003-0986-2590
Allison ImrieSchool of Biomedical Sciences, University of Western Australia, Nedlands, WA 6009, Australia.ORCID 0000-0003-4715-6662
The University of Western Australia · AUEijkman Institute for Molecular Biology · IDJambi University · IDUniversitas Syiah Kuala · ID

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dengue is a mosquito-borne disease of public health concern affecting tropical and subtropical countries, including Indonesia. Although studies on dengue epidemiology have been undertaken in Indonesia, data are lacking in many areas of the country. The aim of this study was to determine dengue virus (DENV) and chikungunya virus (CHIKV) molecular epidemiology in western regions of the Indonesian archipelago. A one-year prospective study was conducted in Aceh and Jambi in 2015 and 2016, respectively, where patients with dengue-like illness were enrolled. Of 205 patients recruited, 29 and 27 were confirmed with dengue in Aceh and Jambi, respectively, and three from Jambi were confirmed with chikungunya. DENV-1 was the predominant serotype identified in Aceh while DENV-2 was predominant in Jambi. All DENV-1 and DENV-2 from both regions were classified as Genotype I and Cosmopolitan genotype, respectively, and all DENV-3 viruses from Jambi were Genotype I. Some viruses, in particular DENV-1, displayed a distinct lineage distribution, where two DENV-1 lineages from Aceh were more closely related to viruses from China instead of Jambi highlighting the role of travel and flight patterns on DENV transmission in the region. DENV-2 from both Aceh and Jambi and DENV-3 from Jambi were all closely related to Indonesian local strains. All three CHIKV belonged to Asian genotype and clustered closely with Indonesian CHIKV strains including those previously circulating in Jambi in 2015, confirming continuous and sustainable transmission of CHIKV in the region. The study results emphasize the importance of continuous epidemiological surveillance of arboviruses in Indonesia and simultaneous testing for CHIKV among dengue-suspected patients.

Indexed as

AdolescentAdultChikungunya FeverChikungunya virusChildChild, PreschoolCross-Sectional StudiesDengueDengue VirusFemaleGenotypeHumansIndonesiaInfantMaleMiddle AgedAcehchikungunyadengueepidemiologyIndonesiaJambiphylogenetic

Identifiers

PMID35062303
PMCPMC8779054
OpenAlexW4205155714

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.