Evidence map›Paper›PMID 35062015›Full record

ArticleNature2022

SARS-CoV-2 Omicron virus causes attenuated disease in mice and hamsters.

Peter J Halfmann, Shun Iida, Kiyoko Iwatsuki-Horimoto, Tadashi Maemura, Maki Kiso, Suzanne M Scheaffer, Tamarand L Darling, Astha Joshi, Samantha Loeber, Gagandeep Singh and 58 more

Registry-linked trialOpen access · hybridAbstract read
In one paragraph

Article in Nature, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05559138 (Analysis of Clinical Characteristics of Hemodialysis Patients With Omicron Infection), which is not on this map. Cited by 453 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
453citing papers in PubMed, 2 pooled it
68.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05559138 completednot on this map

Analysis of Clinical Characteristics of Hemodialysis Patients With Omicron Infection

TypeobservationalSponsorRenJi HospitalRan2022 to 2022Enrolled260ConditionsCOVID-19Armsno intervention
3 · Its place in the literature

Who cites it

453 citing papers in PubMed, 2 syntheses or guidelines pooled it, 690 citations in OpenAlex.

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393 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

68 authors at 11 institutions in 3 countries.

Peter J Halfmann *Influenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, USA.
Shun Iida *Department of Pathology, National Institute of Infectious Diseases, Tokyo, Japan.ORCID http://orcid.org/0000-0003-2258-9031
Kiyoko Iwatsuki-Horimoto *Division of Virology, Institute of Medical Science, University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-8266-020X
Tadashi Maemura *Influenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, USA.
Maki Kiso *Division of Virology, Institute of Medical Science, University of Tokyo, Tokyo, Japan.
Suzanne M ScheafferDepartment of Medicine, Washington University School of Medicine, St Louis, MO, USA.
Tamarand L DarlingDepartment of Medicine, Washington University School of Medicine, St Louis, MO, USA.
Astha JoshiDepartment of Medicine, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0003-4914-8228
Samantha LoeberDepartment of Surgical Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, USA.
Gagandeep SinghDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0003-3260-2631
Stephanie L FosterCenter for Childhood Infections and Vaccines of Children's Healthcare of Atlanta, Department of Pediatrics, Emory Vaccine Center, Emory University School of Medicine, Atlanta, GA, USA.ORCID http://orcid.org/0000-0002-3097-1129
Baoling YingDepartment of Medicine, Washington University School of Medicine, St Louis, MO, USA.
James Brett CaseDepartment of Medicine, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0001-7331-5511
Zhenlu ChongDepartment of Medicine, Washington University School of Medicine, St Louis, MO, USA.
Bradley WhitenerDepartment of Medicine, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0001-6652-0701
Juan MolivaVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Katharine FloydCenter for Childhood Infections and Vaccines of Children's Healthcare of Atlanta, Department of Pediatrics, Emory Vaccine Center, Emory University School of Medicine, Atlanta, GA, USA.ORCID http://orcid.org/0000-0002-0866-6961
Michiko UjieDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, Japan.
Noriko NakajimaDepartment of Pathology, National Institute of Infectious Diseases, Tokyo, Japan.
Mutsumi ItoDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, Japan.
Ryan WrightInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, USA.
Ryuta UrakiDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0003-0890-1922
Prajakta WarangDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Matthew GagneVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Rong LiDepartment of Animal Dairy, and Veterinary Sciences, College of Agriculture and Applied Sciences, Utah State University, Logan, UT, USA.
Yuko Sakai-TagawaDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, Japan.
Yanan LiuDepartment of Animal Dairy, and Veterinary Sciences, College of Agriculture and Applied Sciences, Utah State University, Logan, UT, USA.
Deanna LarsonDepartment of Animal Dairy, and Veterinary Sciences, College of Agriculture and Applied Sciences, Utah State University, Logan, UT, USA.
Jorge E OsorioDepartment of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin, Madison, WI, USA.
Juan P Hernandez-OrtizColombia/Wisconsin One-Health Consortium and One-Health Genomic Laboratory, Universidad Nacional de Colombia, Medellín, Colombia.ORCID http://orcid.org/0000-0003-0404-9947
Amy R HenryVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Karl CiuoderisColombia/Wisconsin One-Health Consortium and One-Health Genomic Laboratory, Universidad Nacional de Colombia, Medellín, Colombia.
Kelsey R FlorekWisconsin State Laboratory of Hygiene, Madison, WI, USA.ORCID http://orcid.org/0000-0002-8743-8579
Mit PatelCenter for Childhood Infections and Vaccines of Children's Healthcare of Atlanta, Department of Pediatrics, Emory Vaccine Center, Emory University School of Medicine, Atlanta, GA, USA.
Abby OdleDepartment of Microbiology and Immunology, University of Iowa, Iowa City, IA, USA.
Lok-Yin Roy WongDepartment of Microbiology and Immunology, University of Iowa, Iowa City, IA, USA.
Allen C BatemanWisconsin State Laboratory of Hygiene, Madison, WI, USA.
Zhongde WangDepartment of Animal Dairy, and Veterinary Sciences, College of Agriculture and Applied Sciences, Utah State University, Logan, UT, USA.ORCID http://orcid.org/0000-0003-2441-4729
Venkata-Viswanadh EdaraCenter for Childhood Infections and Vaccines of Children's Healthcare of Atlanta, Department of Pediatrics, Emory Vaccine Center, Emory University School of Medicine, Atlanta, GA, USA.ORCID http://orcid.org/0000-0001-9321-7839
Zhenlu ChongDepartment of Medicine, Washington University School of Medicine, St Louis, MO, USA.
John FranksDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Trushar JeevanDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Thomas FabrizioDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, Tennessee, USA.ORCID http://orcid.org/0000-0002-8960-0728
Jennifer DeBeauchampDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Lisa KercherDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Patrick SeilerDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Ana Silvia Gonzalez-ReicheDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0003-3583-4497
Emilia Mia SordilloDepartment of Pathology, Molecular and Cell-Based Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0001-7787-3051
Lauren A ChangDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0002-3287-3987
Harm van BakelDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0002-1376-6916
Viviana SimonDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0002-6416-5096
Consortium Mount Sinai Pathogen Surveillance (PSP) study group
Daniel C DouekVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Nancy J SullivanVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Larissa B ThackrayDepartment of Medicine, Washington University School of Medicine, St Louis, MO, USA.ORCID http://orcid.org/0000-0002-9380-6569
Hiroshi UekiDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-6557-0771
Seiya YamayoshiDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0001-7768-5157
Masaki ImaiDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0001-6988-1975
Stanley PerlmanDepartment of Microbiology and Immunology, University of Iowa, Iowa City, IA, USA.ORCID http://orcid.org/0000-0003-4213-2354
Richard J WebbyDepartment of Infectious Diseases, St Jude Children's Research Hospital, Memphis, Tennessee, USA.ORCID http://orcid.org/0000-0002-4397-7132
Robert A SederVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.ORCID http://orcid.org/0000-0003-3133-0849
Mehul S SutharCenter for Childhood Infections and Vaccines of Children's Healthcare of Atlanta, Department of Pediatrics, Emory Vaccine Center, Emory University School of Medicine, Atlanta, GA, USA.
Adolfo García-SastreDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0002-6551-1827
Michael SchotsaertDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0003-3156-3132
Tadaki SuzukiDepartment of Pathology, National Institute of Infectious Diseases, Tokyo, Japan.ORCID http://orcid.org/0000-0002-3820-9542
Adrianus C M BoonDepartment of Medicine, Washington University School of Medicine, St Louis, MO, USA. jboon@wustl.edu.ORCID http://orcid.org/0000-0002-4700-8224
Michael S DiamondDepartment of Medicine, Washington University School of Medicine, St Louis, MO, USA. mdiamond@wustl.edu.ORCID http://orcid.org/0000-0002-8791-3165
Yoshihiro KawaokaInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, USA. yoshihiro.kawaoka@wisc.edu.ORCID http://orcid.org/0000-0001-5061-8296
Icahn School of Medicine at Mount Sinai · USWashington University in St. Louis · USTokyo University of Science · JPSt. Jude Children's Research Hospital · USNational Institutes of Health · USUniversity of Wisconsin–Madison · USEmory University · USUtah State University · USNational Institute of Infectious Diseases · JPUniversity of Iowa · USUniversidad Nacional de Colombia · CO

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
COLLABORATIVE INFLUENZA VACCINE INNOVATION CENTER: UNIVERSAL INFLUENZA VACCINE RESEARCH75N93019C00051 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KRAMMER, FLORIAN · 2019 to 2025
$105.4M
NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00016 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI WEBBY, RICHARD · 2021 to 2025
$91.4M
NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00014 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GARCIA-SASTRE, ADOLFO · 2021 to 2025
$62.6M
NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00017 · NIAID · EMORY UNIVERSITY · PI LOWEN, ANICE · 2021 to 2025
$27.3M
SARS-CoV Proteins in Heterologous Viral InfectionP01AI060699 · NIAID · UNIVERSITY OF IOWA · PI PERLMAN, STANLEY · 2004 to 2021
$21.5M
TRAINING PROGRAM: MECHANISMS OF VIRUS-HOST INTERACTIONST32AI007647 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI Domenico Tortorella · 2000 to 2026
$11.5M
Emerging infections: surveillance, epidemiology and pathogenesisU01AI151810 · NIAID · WASHINGTON UNIVERSITY · PI Adrianus CM Boon, DAVID WANG · 2020 to 2026
$10.0M
Innate and Adaptive Immune Responses in SARS-CoV-2 infection (COVID-19)ZIAAI005151 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI DOUEK, DANIEL CESAR · 2020 to 2025
$6.8M
Human antibody-based countermeasures against the Wuhan Coronavirus SARS-CoV-2R01AI157155 · NIAID · WASHINGTON UNIVERSITY · PI BARIC, RALPH S, CROWE, JAMES E · 2020 to 2024
$6.0M
InflammationZIAAI005031 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI DOUEK, DANIEL CESAR · 2009 to 2024
$5.9M
Role of eicosanoids in pathogenic human CoV infectionsR01AI129269 · NIAID · UNIVERSITY OF IOWA · PI Stanley Perlman · 2016 to 2026
$4.7M
NIAID NIH HHS 75N93019C00051NIAID NIH HHS 75N93021C00014NIAID NIH HHS 75N93021C00016NIAID NIH HHS 75N93021C00017NIAID NIH HHS HHSN272201400004CNIAID NIH HHS HHSN272201400008CNIAID NIH HHS HHSN272201700041INIAID NIH HHS P01 AI060699NIAID NIH HHS R01 AI129269NIAID NIH HHS R01 AI157155NIAID NIH HHS R56 AI147623NIAID NIH HHS T32 AI007647NIAID NIH HHS U01 AI151810NIDDK NIH HHS R01 DK130425NIH HHS P51 OD011132NIH HHS S10 OD026880NIH HHS S10 OD030463U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) 75N93020F00001/A38U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) P51OD011132U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01 AI129269U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R56AI147623U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) R01DK130425
6 · The paper itself

Abstract

The recent emergence of B.1.1.529, the Omicron variant

Indexed as

Disease Models, AnimalAngiotensin-Converting Enzyme 2AnimalsCOVID-19CricetinaeFemaleHumansLungMaleMesocricetusMiceMice, Inbred BALB CMice, Inbred C57BLMice, TransgenicSARS-CoV-2Viral LoadACE2 protein, humanAngiotensin-Converting Enzyme 2

Identifiers

PMID35062015
PMCPMC8942849
OpenAlexW4206135665

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.