Evidence map›Paper›PMID 35061012›Full record

ArticleThe Journal of experimental medicine2022

Single-cell immune profiling reveals functional diversity of T cells in tuberculous pleural effusion.

Yi Cai, Yejun Wang, Chenyan Shi, Youchao Dai, Fuxiang Li, Yuzhong Xu, Peize Zhang, Fanhui Kong, Guofang Deng, Zhihua Wen and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
4.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. iScience · 2025
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. CD226 identifies effector CD8Cell reports · 2025
    Article
  12. Review
  13. Article
  14. Landscape of T Cells in Tuberculous Pleural Effusion.The clinical respiratory journal · 2025
    Article
  15. Article
  16. Article
  17. Progress of single-cell sequencing technology in immunotherapy for tuberculosis.Frontiers in cellular and infection microbiology · 2025
    Review
  18. Article
  19. Granzyme KNature communications · 2024
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 3 countries.

Yi Cai *Guangdong Key Laboratory of Regional Immunity and Diseases, Department of Pathogen Biology, Shenzhen University School of Medicine, Shenzhen, China.ORCID 0000-0002-1363-2328
Yejun Wang *Guangdong Key Laboratory of Regional Immunity and Diseases, Department of Pathogen Biology, Shenzhen University School of Medicine, Shenzhen, China.ORCID 0000-0003-4030-0027
Chenyan Shi *Guangdong Key Laboratory of Regional Immunity and Diseases, Department of Pathogen Biology, Shenzhen University School of Medicine, Shenzhen, China.ORCID 0000-0002-1898-4170
Youchao DaiGuangdong Key Laboratory of Regional Immunity and Diseases, Department of Pathogen Biology, Shenzhen University School of Medicine, Shenzhen, China.ORCID 0000-0002-6586-2627
Fuxiang LiGuangdong Key Laboratory of Regional Immunity and Diseases, Department of Pathogen Biology, Shenzhen University School of Medicine, Shenzhen, China.ORCID 0000-0002-6681-0001
Yuzhong XuDepartment of Clinical Laboratory, Shenzhen Baoan hospital, Shenzhen, China.ORCID 0000-0002-8056-8338
Peize ZhangGuangdong Key Lab for Diagnosis & Treatment of Emerging Infectious Diseases, Shenzhen Third People's Hospital, Shenzhen, China.ORCID 0000-0002-4023-0228
Fanhui KongHarbin Thoracic Hospital, Harbin, China.ORCID 0000-0001-8583-8395
Guofang DengGuangdong Key Lab for Diagnosis & Treatment of Emerging Infectious Diseases, Shenzhen Third People's Hospital, Shenzhen, China.ORCID 0000-0003-2479-3327
Zhihua WenShenzhen University and Yuebei Second People's Hospital Joint Lab, Yuebei Second People's Hospital, Shaoguan, China.ORCID 0000-0001-8758-8262
Qi ZhouAnalytical Biosciences Limited, Beijing, China.ORCID 0000-0001-9453-4940
Boxi Chris KangAnalytical Biosciences Limited, Beijing, China.ORCID 0000-0002-0276-0519
Amit SinghalInfectious Diseases Labs, Agency for Science, Technology and Research, Singapore.ORCID 0000-0003-3913-8798
Qianting YangGuangdong Key Lab for Diagnosis & Treatment of Emerging Infectious Diseases, Shenzhen Third People's Hospital, Shenzhen, China.ORCID 0000-0003-3820-8707
Carl G FengGuangdong Key Laboratory of Regional Immunity and Diseases, Department of Pathogen Biology, Shenzhen University School of Medicine, Shenzhen, China.ORCID 0000-0003-4301-4640
Xinchun ChenGuangdong Key Laboratory of Regional Immunity and Diseases, Department of Pathogen Biology, Shenzhen University School of Medicine, Shenzhen, China.ORCID 0000-0002-2101-9013
Shenzhen University · CNShenzhen Third People’s Hospital · CNAnalytical Biosciences (China) · CNAgency for Science, Technology and Research · SGShantou University · CNShenzhen Bao'an District People's Hospital · CNThe University of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Orchestration of an effective T lymphocyte response at infection sites is critical for protection against Mycobacterium tuberculosis (Mtb) infection. However, the local T cell immunity landscape in human tuberculosis is poorly defined. Tuberculous pleural effusion (TPE), caused by Mtb, is characterized by an influx of leukocytes to the pleural space, providing a platform suitable for delineating complex tissue responses to Mtb infection. Using single-cell transcriptomics and T cell receptor sequencing, we analyzed mononuclear cell populations in paired pleural fluid and peripheral blood of TPE patients. While all major cell clusters were present in both tissues, their relative proportions varied significantly by anatomic location. Lineage tracking analysis revealed subsets of CD8 and CD4 T cell populations with distinct effector functions specifically expanded at pleural sites. Granzyme K-expressing CD8 T cells were preferentially enriched and clonally expanded in pleural fluid from TPE, suggesting that they are involved in the pathogenesis of the disease. The findings collectively reveal the landscape of local T cell immunity in tuberculosis.

Indexed as

BiomarkersCell DifferentiationDisease SusceptibilityGene Expression ProfilingHost-Pathogen InteractionsHumansImmunophenotypingLymphocyte ActivationLymphocyte CountMycobacterium tuberculosisPleural EffusionReceptors, Antigen, T-CellSingle-Cell AnalysisT-Lymphocyte SubsetsTuberculosisBiomarkersReceptors, Antigen, T-Cell

Identifiers

PMID35061012
PMCPMC8789099
OpenAlexW4206561210

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.