ArticleScience China. Life sciences2022
Genomic insights into versatile lifestyle of three new bacterial candidate phyla.
Article in Science China. Life sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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11 citing papers in PubMed, 15 citations in OpenAlex.
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- Candidatus List No. 6.International journal of systematic and evolutionary microbiology · 2025Article
- Hemolymph microbiota and host immunity of crustaceans and mollusks.The ISME journal · 2025Review
- The way to uncovering and utilizing marine microbial resources.Engineering microbiology · 2024Article
- Vertical distribution of Candidatus Methylomirabilis and Methanoperedens in agricultural soils.Applied microbiology and biotechnology · 2024Article
- Article
- PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model.Bioinformatics (Oxford, England) · 2023Article
- Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments.Microbiome · 2023Article
- Characterizing sediment functional traits and ecological consequences respond to increasing antibiotic pollution.Applied microbiology and biotechnology · 2023Article
- An Ancient Respiratory System in the Widespread Sedimentary Archaea Thermoprofundales.Molecular biology and evolution · 2022Article
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Authors and funding
8 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Metagenomic explorations of the Earth's biosphere enable the discovery of previously unknown bacterial lineages of phylogenetic and ecological significance. Here, we retrieved 11 metagenomic-assembled genomes (MAGs) affiliated to three new monophyletic bacterial lineages from the seawater of the Yap Trench. Phylogenomic analysis revealed that each lineage is a new bacterial candidate phylum, subsequently named Candidatus Qinglongiota, Candidatus Heilongiota, and Candidatus Canglongiota. Metabolic reconstruction of genomes from the three phyla suggested that they adopt a versatile lifestyle, with the potential to utilize various types of sugars, proteins, and/or short-chain fatty acids through anaerobic pathways. This was further confirmed by a global distribution map of the three phyla, indicating a preference for oxygen-limited or particle-attached niches, such as anoxic sedimentary environments. Of note, Candidatus Canglongiota genomes harbor genes for the complete Wood- Ljungdahl pathway and sulfate reduction that are similar to those identified in some sulfate-reducing bacteria. Evolutionary analysis indicated that gene gain and loss events, and horizontal gene transfer (HGT) play important roles in shaping the genomic and metabolic features of the three new phyla. This study presents the genomic insight into the ecology, metabolism, and evolution of three new phyla, which broadens the phylum-level diversity within the domain Bacteria.
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